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	<title>Issue 67 (January &#8211; February 2009) &#8211; Fountain Magazine</title>
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		<title>From Genes to Proteins: A New Level of Complexity</title>
		<link>https://fountainmagazine.com/all-issues/2009/issue-67-january-february-2009/from-genes-to-proteins-a-new-level-of-complexity/</link>
		
		<dc:creator><![CDATA[Louima Cunningham]]></dc:creator>
		<pubDate>Thu, 01 Jan 2009 00:00:00 +0000</pubDate>
				<category><![CDATA[Issue 67 (January - February 2009)]]></category>
		<category><![CDATA[biologists]]></category>
		<category><![CDATA[biology]]></category>
		<category><![CDATA[cell]]></category>
		<category><![CDATA[complex]]></category>
		<category><![CDATA[diseases]]></category>
		<category><![CDATA[dna]]></category>
		<category><![CDATA[gene]]></category>
		<category><![CDATA[genes]]></category>
		<category><![CDATA[genetic]]></category>
		<category><![CDATA[genome]]></category>
		<category><![CDATA[genomics]]></category>
		<category><![CDATA[human]]></category>
		<category><![CDATA[information]]></category>
		<category><![CDATA[letters]]></category>
		<category><![CDATA[networks]]></category>
		<category><![CDATA[proteins]]></category>
		<category><![CDATA[proteomics]]></category>
		<category><![CDATA[Science]]></category>
		<category><![CDATA[scientists]]></category>
		<category><![CDATA[synthetic]]></category>
		<category><![CDATA[words]]></category>
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					<description><![CDATA[Newspapers frequently run articles reporting a study about a gene linked to some disease. Thanks to such wide media coverage, the word &#8220;gene&#8221; has become a household term for most of us. And, genetics, the study of genes, probably owes its popularity to a female sheep you are all familiar with: yes, I mean Dolly, [&#8230;]]]></description>
										<content:encoded><![CDATA[<p>Newspapers frequently run articles reporting a study about a gene linked to some disease. Thanks to such wide media coverage, the word &#8220;gene&#8221; has become a household term for most of us. And, genetics, the study of genes, probably owes its popularity to a female sheep you are all familiar with: yes, I mean Dolly, the first animal successfully cloned from an adult body cell.</p>
<p>We inherit our hereditary characteristics from our parents. The basic unit responsible for inheritance in our body is the gene. More technically, a gene is a hereditary unit consisting of a sequence of DNA that occupies a specific location on a chromosome and determines a particular characteristic in an organism. Genes are like words on the long string of DNA. The description of the fundamental process of synthesizing proteins from the information on genes is called the &#8220;Central Dogma.&#8221; According to this dogma, DNA is used to synthesize RNA, and in turn, RNA is used to synthesize proteins. Hence, this dogma dictates the link between genes and proteins. Proteins are actually a translated and three-dimensional version of the linear information stored in genes.</p>
<h3><b>The Structure of DNA </b></h3>
<p>DNA (Deoxyribonucleic acid) is our repository of genetic information. Although there are organisms such as RNA viruses that possess RNA (ribonucleic acid) as their genetic material, virtually all other living organisms inherit their genes through DNA. Hence, DNA is vital for the existence and perpetuation of life on Earth.</p>
<p>In a simple comparison, DNA can be likened to a sequence of letters where each letter is a single nucleotide, and the alphabet has only four letters: A, T, C and G. Although this alphabet is extremely small compared to those used in human communication today, we are still capable of capturing the vast size of human DNA with this analogy: Our DNA is composed of a sequence of nearly 3 billion (3,000,000,000) of these letters. What this means is that, if you were to type out your genetic code, you would have a 5,000-volume encyclopedia, with each volume containing 400 pages, and each page having 1,500 letters! But then, how do we even fit this formidable size of information in every single cell of our body? The answer lies in the astonishing folding, packaging and wrapping steps DNA goes through upon synthesis. Positioning nucleotides side by side, each DNA molecule would take up about 6 feet (~2 meters) of space. However, after all the packaging steps, DNA becomes compact enough to fit in not only a cell, but also in the microscopic nucleus of each cell.</p>
<h3><b>Genes and the Human Genome Project</b></h3>
<p>Unfortunate for our alphabet analogy above, the 3 billion nucleotides in DNA do not contain any spaces to let us know where each word begins and ends. The Human Genome Project accomplished the task of unraveling what these 3 billion letters are (each one is one of A,T,C and G) and this was a major achievement of humanity. However, it was not until then that we realized the real challenge DNA posed us: Where were the genes in DNA? In other words, how would we understand the words and sentences in this 3-billion string of letters? Apart from efforts to discover the DNA sequences of other organisms, it is not unfair to say that the interest and workforce once focused on the Human Genome Project has now almost completely shifted to this latter &#8220;real&#8221; challenge of discovering the genes in DNA.</p>
<p>How we wish life could be that easy! Just as completing the human DNA sequence made us realize that we did not know where the genes are, discovering some genes allowed us to understand that we would still be missing a major part of the picture even if we knew exactly where each gene was. Do we not frequently encounter instances in everyday life where one word means different things depending on context? So, is there any good reason to think that genes on our chromosomes will be any less complex? Unfortunately not. Quite to the contrary, the sense is growing that genes are actually far more complex and intricate than we originally thought. For one thing, a single gene may not cause an immediate effect, but may interact with a network of other genes to produce the final effect. Diseases that are caused by individual genes are actually very few, a famous example being cystic fibrosis. But diseases that are affected by the interaction of many genes are far more numerous and prevalent, for example, breast cancer, Alzheimer&#8217;s disease, Type 1 diabetes mellitus, multiple sclerosis and obesity.</p>
<p>This latter group of diseases is appropriately called &#8220;complex diseases.&#8221; Efforts are under way to decipher the intricate genetic and protein networks responsible for such diseases; however, there are so many (known and also unknown) variables that biologists have already called for help. Research problems such as complex diseases that require the interaction of biologists, mathematicians, computer scientists and statisticians alike have led to the advent of the currently very popular field of &#8220;Systems Biology.&#8221; Viewing the cell as a large factory, this field aims to understand all molecular networks and interactions that make up the very sophisticated machinery in living systems. After deciphering how cells operate flawlessly as a complex system, humans will be better able to discover causes of diseases, and will also be in a much better position to manipulate cells to cure diseases.</p>
<p>The idea of manipulating cells and cell components such as genes and proteins has actually led to &#8220;Synthetic Biology,&#8221; which is, in essence, the engineering approach to Systems Biology. Synthetic biologists try to engineer gene and protein networks in the cellular machinery to program cells for synthesizing custom-tailored molecules. This can be in the form of redesigning or producing mass amounts of existing molecules, or synthesizing nonexistent molecules that have medical or other potential uses. The overall significance of the field can be well understood by the following quote from one of the pioneers of the field, UC Berkeley professor Jay Keasling: &#8220;(Synthetic biology is) doing for biology what electrical engineering did for physics and what chemical engineering has done for chemistry.&#8221;</p>
<p>One example of synthetic biology comes from Jay Keasling&#8217;s lab. In collaboration with the Gates Foundation and OneWorld Health, the first nonprofit pharmaceutical in the US, Dr. Keasling&#8217;s lab is engineering a new metabolic pathway in E.coli to produce the precursor to artemisinin, currently the most effective treatment for malaria. The prospects include a drastic drop in cost, from dollars to dimes. Moreover, success in redesigning a metabolic pathway in bacteria holds great promise for reproducibility for other similar pathways important for the pharmaceutical, cosmetics and food industries.</p>
<h3><b>Genomics vs. proteomics </b></h3>
<p>Molecular biologists, today, are inundated with neologies ending with the suffix &#8220;-ome&#8221; and &#8220;-omics.&#8221; The consequence is that the expression &#8220;–omics&#8221; craze has found its place in the everyday language of these scientists. Basically, the suffix &#8220;-om-&#8221; refers to a totality of some sort. All the genes considered as a whole in an organism&#8217;s cell are called the &#8220;genome, and similarly all the proteins this genome can synthesize are referred to as the &#8220;proteome.&#8221; &#8220;Genomics&#8221; and &#8220;proteomics&#8221; refer to the study of the relevant &#8220;-ome,&#8221; as opposed to studying genes and proteins one by one.</p>
<p>Even though there exist so many –omics words in the literature these days, genomics and proteomics remain the most popular and useful ones. Proteomics can be thought of as the natural successor to genomics because it is fundamentally the next level of complexity after genomics. While scientists explore gene networks and their interactions in genomics, proteomics involves the study of all the proteins and their interactions in the cellular machinery of an organism. Unfortunately, the next level of complexity does not mean &#8220;linearly more complex&#8221; in this case; studying networks of three-dimensional molecules is an immensely more daunting task than studying those of one-dimensional DNA sequences. However, luckily for us, scientists are up to this challenge. Yet again, we observe a shift in focus in the scientific community from genomics to proteomics.</p>
<p>The main motivation for this shift can be roughly understood with an analogy from marketing or another one from military warfare. In the former, if you want a better marketing strategy for your product, you should target end-users first and foremost. Understanding behavioral patterns and preferences of end-users is much more important than understanding likes of your vendors, because eventually it is the end-user who will determine the demand for your product. In the latter analogy, we think of an army of soldiers who receive orders from a general commander; however, these orders can later be modified or completely annulled by orders from other commanders still in the hierarchical order. If you think about how reliable and informative knowing the orders that each soldier has received from the general commander is going to be, you will understand how useful it will be to have information on genes without supplementary information on proteins. Gene products, either RNAs or proteins, may undergo some steps called &#8220;post-translational modification&#8221; that are not completely understood, and worse yet may not be completely deterministic (implying random factors).</p>
<p>So, with the help of the analogies mentioned above, we can reason that the shift in focus of the scientific community from genomics to proteomics is mainly due to the fact that biological functions are carried out, not by DNA or genes, but by proteins and (although much less frequently than by proteins) by RNA molecules. For medical and other practical purposes, it is more important to acquire information on the proteome rather than the genome. This, of course, is not to suggest underestimating the importance of the genome. The genome preserves its significance as the origin and source of genetic information. It is just not as beneficial to think about the genome without looking at the final product, that is the proteome.</p>
<h3><b>Conclusion</b></h3>
<p>The completion of the rough draft of the Human Genome Project in 2000 marked the end of the Genetic Era and paved the way to the Genomic Era. The breakthroughs that have taken place since this cornerstone event have been breathtaking, awe-inspiring and maybe even hard to catch up with. The Genomic Era had given birth to different fields in a span of few years, and the biological scientific community has had to shift its focus from genomics to proteomics even without having sorted out the puzzles of the genome. The advent of the &#8220;-omics craze&#8221; was probably a by-product of this shift because suddenly each sub-field of molecular biology had to adapt a holistic approach in its explorations. Investigating a single entity, whether it be a gene or a protein or another molecule, quickly became stigmatized as &#8220;obsolete.&#8221;</p>
<p>This transition to a holistic approach has resulted in the interaction of biologists with scientists from quantitative fields such as mathematics, statistics and computer science. These interactions gave rise to truly interdisciplinary research fields such as systems biology, synthetic biology and computational biology. More and more scientists today believe that competence in the future will rely on incorporating expertise from these different fields. With each new discovery, realizing the level of complexity and the intricacy in the design of our body leaves us in true awe. Moreover, these discoveries only make it easier for us to grasp how little we know about the miraculous design of biological systems. On the other hand, this awareness makes us even more motivated to delve into scientific efforts because understanding the science behind creation takes us directly to the understanding of our Creator.</p>
<p><em>Jason Newfoundland is a PhD candidate in Bioinformatics at University of Michigan.</em></p>
<h3><b>Notes</b></h3>
<ol>
<li>http://www.answers.com/topic/gene?cat=technology</li>
<li>This amazing process is demonstrated in this link: http://www.dnai.org/text/mediashowcase/index2.html?id=556</li>
<li>Synthetic Biology: Change on the Horizon, Karsten Temme, http://no.oneslistening.com/277</li>
<li>A glossary for –omics words exists at http://www.genomicglossaries.com/content/omes.asp</li>
</ol>
<p> </p>
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		<title>Ode no XXXI from Bang-i-D&#8217;rra</title>
		<link>https://fountainmagazine.com/all-issues/2009/issue-67-january-february-2009/ode-no-xxxi-from-bang-i-drra/</link>
		
		<dc:creator><![CDATA[Louima Cunningham]]></dc:creator>
		<pubDate>Thu, 01 Jan 2009 00:00:00 +0000</pubDate>
				<category><![CDATA[Issue 67 (January - February 2009)]]></category>
		<category><![CDATA[arif]]></category>
		<category><![CDATA[bang]]></category>
		<category><![CDATA[bear]]></category>
		<category><![CDATA[desire]]></category>
		<category><![CDATA[effort]]></category>
		<category><![CDATA[exploration]]></category>
		<category><![CDATA[grow]]></category>
		<category><![CDATA[heaven]]></category>
		<category><![CDATA[iqbal]]></category>
		<category><![CDATA[limited]]></category>
		<category><![CDATA[Literature & Languages]]></category>
		<category><![CDATA[muhammad]]></category>
		<category><![CDATA[ode]]></category>
		<category><![CDATA[rose]]></category>
		<category><![CDATA[rra]]></category>
		<category><![CDATA[searching]]></category>
		<category><![CDATA[seema]]></category>
		<category><![CDATA[soul]]></category>
		<category><![CDATA[thorns]]></category>
		<category><![CDATA[thy]]></category>
		<category><![CDATA[witness]]></category>
		<guid isPermaLink="false">http://107.21.79.195/all-issues/2009/issue-67-january-february-2009/ode-no-xxxi-from-bang-i-drra/</guid>

					<description><![CDATA[Every object is at strife in the desire to &#8220;be&#8221; Churning in time, &#8220;the process of becoming&#8221; Every particle must sacrifice the ego to mill Listening to the call, enabling Divine Will Death in &#8220;itself&#8221; is the desire to &#8220;live&#8221; Eternity is in giving away to rebuild The mountains squash at the will of self [&#8230;]]]></description>
										<content:encoded><![CDATA[<p>Every object is at strife in the desire to &#8220;be&#8221;</p>
<p>Churning in time, &#8220;the process of becoming&#8221;</p>
<p>Every particle must sacrifice the ego to mill</p>
<p>Listening to the call, enabling Divine Will</p>
<p>Death in &#8220;itself&#8221; is the desire to &#8220;live&#8221;</p>
<p>Eternity is in giving away to rebuild</p>
<p>The mountains squash at the will of self</p>
<p>The meek perceive a mound a hill</p>
<p>Wandering hither and thither the lowly stars</p>
<p>Are but lost in the vastness of heaven,</p>
<p>To realize oneself, one has to part</p>
<p>It is the destiny, for existence, for non-being.</p>
<p>The moon is pale; loosing glamour at the last stretch</p>
<p>All secrets told, is stripped off into void</p>
<p>Soon the demons of dark will engulf the bright.</p>
<p>Why looking for a phantom light&#8230;?</p>
<p>Thy lamp is thy heart, O&#8217; forlorn</p>
<p>Leave the sojourn, thee, thyself is the guide.</p>
<p>Thou art real, the only truth in heaven,</p>
<p>On the earth; the whole universe&#8217;s might.</p>
<p>Resting in a world of fabricated illusion,</p>
<p>Deserts are but for an infinite exploration</p>
<p>Thorns bear witness to a searching soul</p>
<p>How limited is the effort to grow one Rose</p>
<p>Yet, ye complain scarcity of the resource.</p>
<p>Mercy O benevolent, the most compassionate Lord.</p>
<p>Upon the ignorant, the sinful, and the tyrant</p>
<p>I urge to see an oasis, not an iced spring at a stronghold.</p>
<p><em>Muhammad Iqbal</em></p>
<p>Ode No XXX1 from Bang-i-D&#8217;rra of Muhammad Iqbal. Translated from Urdu by Seema Arif.</p>
<p>Seema Arif is an assistant professor of Business Administration, University of Central Punjab, Lahore, Pakistan.</p>
<p> </p>
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		<title>Raja (Hope or Expectation)</title>
		<link>https://fountainmagazine.com/all-issues/2009/issue-67-january-february-2009/raja-hope-or-expectation/</link>
		
		<dc:creator><![CDATA[Louima Cunningham]]></dc:creator>
		<pubDate>Thu, 01 Jan 2009 00:00:00 +0000</pubDate>
				<category><![CDATA[Issue 67 (January - February 2009)]]></category>
		<category><![CDATA[Belief]]></category>
		<category><![CDATA[Emerald Hills of the Heart]]></category>
		<category><![CDATA[Expectation]]></category>
		<category><![CDATA[hope]]></category>
		<category><![CDATA[Islamic Sufism]]></category>
		<category><![CDATA[Raja]]></category>
		<category><![CDATA[Sufism]]></category>
		<guid isPermaLink="false">http://107.21.79.195/all-issues/2009/issue-67-january-february-2009/raja-hope-or-expectation/</guid>

					<description><![CDATA[For a Sufi, Raja means waiting for that which he or she wholeheartedly desires to come into existence, acceptance of good deeds, and forgiveness of sins. Hope or expectation, both based on the fact that the individual is solely responsible for his or her errors and sins and that all good originates from and is [&#8230;]]]></description>
										<content:encoded><![CDATA[<p>For a Sufi, Raja means waiting for that which he or she wholeheartedly desires to come into existence, acceptance of good deeds, and forgiveness of sins. Hope or expectation, both based on the fact that the individual is solely responsible for his or her errors and sins and that all good originates from and is of God&#8217;s Mercy, is seen in this way: To avoid being caught in vices and faults and brought down by self-conceit over good deeds and virtues, an initiate must advance toward God through the constant seeking of forgiveness, prayer, avoidance of evil, and pious acts.</p>
<p><span id="more-986"></span></p>
<p>One&#8217;s life must be lived in constant awareness of God&#8217;s supervision, and one must knock tirelessly on His door with supplication and contrition. If an initiate successfully establishes such a balance between fear and hope, he or she will neither despair (of being a perfect, beloved servant of God) nor become conceited about any personal virtues and thereby neglect his or her responsibilities.</p>
<p>True expectation, possessed by those who are sincerely loyal to the Almighty, means seeking God&#8217;s favor by avoiding sins. Such people undertake as many good deeds as possible, and then turn to God in expectation of His mercy. Others, however, have a false expectation. They spend their lives in sin, all the while expecting God&#8217;s favor and reward, even though they perform none of the obligatory duties. They seem to believe that God is obligated to admit everyone to Paradise. Not only is this a false expectation, it is a mark of disrespect for the All-Merciful, the All-Compassionate, for such an expectation reflects their (misplaced) hope that God would violate His very nature to protect them from the consequences of their sins. To think that one is guaranteed a place in Paradise is a sin; to hope and strive for the same is commendable.</p>
<p>For Sufis, hope or expectation is not the same as a wish. A wish is a desire that may or may not be fulfilled, whereas hope or expectation is an initiate&#8217;s active quest, through all lawful means, for the desired destination. In order that God, in His Mercy, will help him or her, the initiate does everything possible, with an almost Prophetic insight and consciousness, to cause all the doors of the Divine shelter to swing open. In other words, hope is the belief that, like His Attributes of Knowledge, Will, and Power, God&#8217;s Mercy also encompasses all creation, and the expectation that he or she may be included in His special mercy: My Mercy embraces all things (A&#8217;raf 7:156); and in a hadith qudsi, a Prophetic saying whose meaning was directly revealed by God, which reads: God&#8217;s Mercy exceeds His Wrath. Indifference to such Mercy, from which even devils hope to benefit in the Hereafter, and despairing of being enveloped by it, which amounts to denying it, is an unforgivable sin.</p>
<p>Hope means that an initiate seeks the ways to reach the Almighty in utmost reliance on His being the All-Munificent and the All-Loving. Muhammad Lutfi Efendi expresses his hope as follows:</p>
<blockquote>
<p>Be kind to me, O my Sovereign,<br />Do not cease favoring the needy and destitute!<br />Does it befit the All-Kind and Munificent<br />To stop favoring His slaves?</p>
</blockquote>
<p>Those who are honored by such Divine kindness can be considered as having found a limitless treasure-especially at a time when a person has lost whatever he or she has, is exposed to misfortune, or feels in his or her conscience the pain of being unable to do anything good or to be saved from evil. In short, when there are no means left that can be resorted to, and all of the ways out end in the Producer of all causes and means, hope illuminates the way, like a heavenly mount that carries one to peaks normally impossible to reach.</p>
<p>Here I cannot help but recall the hope expressed in the last words of Imam Shafi‘i in Gaza:</p>
<blockquote>
<p>When my heart was hardened and my ways were blocked,<br />I made my hope a ladder to Your forgiveness;<br />My sins are too great in my sight, but<br />When I weigh them against Your forgiveness,<br />Your forgiveness is much greater than my sins.</p>
</blockquote>
<p>It is advisable for one to feel fear in order to abandon sin and turn to God. One should cherish hope when falling into the pit of despair and the signs of death appear. Fear removes any feeling of security against God&#8217;s punishment, and hope saves the believer from being overwhelmed by despair. For this reason, one may be fearful even when all obligatory duties have been performed perfectly; one may be hopeful although he or she has been less than successful in doing good deeds. This is what is stated in the following supplication of Yahya ibn Mu&#8217;adh:</p>
<p>O God! The hope I feel in my heart when I indulge in sin is usually greater than the hope I feel after performing the most perfect deeds. This is because I am impaired” with flaws and imperfections, and never sinless and infallible. When I am stained with sin, I rely on no deeds or actions but Your forgiveness. How should I not rely on Your forgiveness, seeing that You are the Generous One?</p>
<p>According to many, hope is synonymous with cherishing a good opinion of the Divine Being. This is related in the following hadith qudsi: I treat My servant in the way he thinks of Me treating him. A man once dreamed that Abu Sahl was enjoying indescribable bounties and blessings, and asked him how he had attained such a degree of reward. Abu Sahl answered: By means of my good opinion of my Lord. That is why we can say that if hope is a means for God&#8217;s manifestation of His infinitely profound Mercy, a believer should never relinquish it. Even if one always performs good deeds and preserves his or her sincerity and altruism, since these are the accomplishments of a finite being with limited capacities, they have little importance when compared with God&#8217;s forgiveness.</p>
<p>Fear and hope are two of the greatest gifts of God that He may implant in a believer&#8217;s heart. If there is a gift greater than these, it is that one should preserve the balance between fear and hope and then use them as two wings of light with which to reach God.</p>
<h3><b>Notes</b></h3>
<ol>
<li>Al-Bukhari, &#8220;Tawhid,&#8221; 55; Muslim, &#8220;Tawba,&#8221; 14-16, Ibn Maja, &#8220;Zuhd,&#8221; 35.</li>
<li>Muhammad ibn Ahmad ibn &#8216;Uthman al-Dhahabi, Siyar &#8216;Alam al-Nubala&#8217;, 25 vols. (Beirut, 1992), 1:150.</li>
<li>Al-Qushayri, Al-Risala, 133.</li>
<li>In other words, one should regard Him as an All-Merciful and All-Forgiving Lord, rather than as an All-Punishing One.</li>
<li>Al-Bukhari, &#8220;Tawhid&#8221;, 15; Muslim, &#8220;Tawba,&#8221; 1; Al-Tirmidhi, &#8220;Dawa‘at,&#8221; 132.</li>
<li>Al-Qushayri, Al-Risala, 134.</li>
</ol>
<p> </p>
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		<title>Radiotherapy</title>
		<link>https://fountainmagazine.com/all-issues/2009/issue-67-january-february-2009/radiotherapy/</link>
		
		<dc:creator><![CDATA[Louima Cunningham]]></dc:creator>
		<pubDate>Thu, 01 Jan 2009 00:00:00 +0000</pubDate>
				<category><![CDATA[Issue 67 (January - February 2009)]]></category>
		<category><![CDATA[activity]]></category>
		<category><![CDATA[body]]></category>
		<category><![CDATA[cell]]></category>
		<category><![CDATA[disease]]></category>
		<category><![CDATA[diseased]]></category>
		<category><![CDATA[effects]]></category>
		<category><![CDATA[energy]]></category>
		<category><![CDATA[gland]]></category>
		<category><![CDATA[Health & Medicine]]></category>
		<category><![CDATA[iodine]]></category>
		<category><![CDATA[metastases]]></category>
		<category><![CDATA[nuclear]]></category>
		<category><![CDATA[nuclei]]></category>
		<category><![CDATA[radiation]]></category>
		<category><![CDATA[radioactive]]></category>
		<category><![CDATA[radiopharmaceuticals]]></category>
		<category><![CDATA[radiotherapy]]></category>
		<category><![CDATA[rays]]></category>
		<category><![CDATA[therapy]]></category>
		<category><![CDATA[thyroid]]></category>
		<category><![CDATA[treatment]]></category>
		<guid isPermaLink="false">http://107.21.79.195/all-issues/2009/issue-67-january-february-2009/radiotherapy/</guid>

					<description><![CDATA[As my brother-in-law had some health complaints such as palpitations, insomnia, irritability and excessive sweating, he asked me if I would accompany him to the doctor. As the doctor listened to and examined him, he began to suspect that my brother-in-law might be suffering from hyperthyroidism (excessive activity of the thyroid gland). A test showed [&#8230;]]]></description>
										<content:encoded><![CDATA[<p>As my brother-in-law had some health complaints such as palpitations, insomnia, irritability and excessive sweating, he asked me if I would accompany him to the doctor. As the doctor listened to and examined him, he began to suspect that my brother-in-law might be suffering from hyperthyroidism (excessive activity of the thyroid gland). A test showed that there were excessive thyroid hormones in his blood. The doctor then advised radiotherapy for him instead of removal of his thyroid glands.</p>
<p><span id="more-987"></span></p>
<p>In this treatment, radioactive iodine atoms are administered to the patient. These are absorbed only by cells of the thyroid gland which are then eliminated by the radiation; as a result of this process, the over-activity of the thyroid gland is prevented. By the divine will of God, the All-Healing, the All-Wise, iodine is absorbed only by thyroid cells but not by any other cell-a truly wonderful phenomenon. This treatment is known as the &#8220;bloodless thyroid operation.&#8221;</p>
<p>After he began this treatment, my brother-in-law visited us one day. As soon as she saw him, my small daughter, who loves her uncle very much, ran to him and sat on his lap where she fell asleep after a very short while. But then she woke up within half an hour and suddenly started vomiting. We later understood that the unseen radiation being emitted from the radioactive substance in her uncle’s body first caused my daughter to fall asleep quickly as if she was anesthetized and later had negative effects on her.</p>
<p>Then, an article in a scientific magazine attracted my attention. The concepts of atomic (or nuclear) energy and radiation are usually perceived negatively because of the atomic bombs which were dropped on Nagasaki and Hiroshima or the accident which occurred at the nuclear reactor in Chernobyl. This negative perception has been caused by the sudden deaths of living species, great destruction and the permanent devastating effects observed in the environment after these events. However, the energy within the atomic nucleus also has many potential advantages for humankind. It is just as possible, with this energy, to illuminate houses and work places everywhere as it is to exterminate all the living beings in a city.</p>
<h3><b>Negative effects of radiation</b></h3>
<p>Radiation energy may directly affect molecules within a cell by causing structural disorders especially in its DNA. It also causes ionization of water molecules within a cell and releases free radicals which are harmful to the cell. Damage to molecules and genetic material within a cell may consequently trigger a process that can cause the death of that cell. Thus, it is strongly advised for pregnant women especially to stay away from sources of radiation and also not to expose the body to frequent radiation even for diagnostic purposes, such as X-rays.</p>
<h3><b>Positive effects of radiation</b></h3>
<p>As we consider its beneficial aspects, we realize that nuclear radiation is just one of the innumerable blessings of God. In the field of medicine, for instance, radiation is used to cure diseases like cancer, a disease which, ironically, it sometimes causes. Blood products and medical equipment may be effectively sterilized by the use of radiation. It is also useful in radiological visualization techniques.</p>
<p>Atomic nuclei with unstable composition (radionuclides), which disintegrate without any external interference, display features of radioactivity. The diffusion of energy-bearing rays α, β, γ as a result of this disintegration is called radioactivity and the energy-bearing rays are called radiation. The radioactive substances which are used for the diagnosis and cure of illnesses are known as radioactive medicines or radiopharmaceuticals. This kind of medicine may be composed of pure radioactive nuclei, or they may be compounds which are radioactivated by synthesizing them with radioactive nuclei.</p>
<p>Compared with other radioactive substances, the radiopharmaceuticals used in radiotherapy must have some specific features in terms of radiation type and energy level. Radiopharmaceuticals should be fully absorbed by diseased organ or tissue to be cured and should be applied in such a way that it disseminates the least possible radiation to the rest of the body (so as not to contaminate the body with radiation). That is, the half-life of the radioactive substance should be such that it maintains the correct level of radiation in the tissues to effect the required cure. God has created radioactive substances which emit pure β-rays so that they are ideal for curative purposes.</p>
<h3><b>Radiotherapy</b></h3>
<p>Radioactive nuclear therapy is a treatment for diseased human tissue, usually by the intravenous injection of a suitably formulated radioactive composition. In this treatment, the radioactive composition, when diffused within the body, is held more intensely within the diseased organs, and a kind of radiotherapy at cellular level is thus achieved. The most outstanding example of this kind of therapy is radioactive iodine treatment. This therapy is most frequently applied in cases of excess activity of the thyroid gland in patients with thyroid cancer. As iodine is mostly consumed by the thyroid gland in our body, radioactive iodine (I-131 which is the radioisotope of the element iodine) is particularly suitable for this treatment. The thyroid gland’s feature of absorbing and retaining more iodine than other organs, makes it feasible to treat this organ exclusively by this method when it is diseased. Other peptides marked with particular radioactive nuclei are used in the treatment of other types of cancer and success is observed in some cases. Nuclear therapy is also used in treatment of bone cancers and of pain caused by certain joint diseases.</p>
<h3>Radiopharmaceuticals in palliative treatment of bone pain from metastases</h3>
<p>The spread of cancerous cells from the diseased organ of the body to other organs is called metastasis. Damage and pain originating from osseous (bone) metastases may cause losses in activity and function for the patient. Radiotherapy has long been used particularly in the treatment of limited bone lesions. However, the side effects of radiotherapy are greater since the body areas exposed to X-rays must be increased where there are widespread osseous metastases.</p>
<p>Radiopharmaceutical therapy is useful for patients who have painful metastases throughout multiple osseous zones. In this therapy the patient receives an intravenous injection of suitably formulated radiopharmaceuticals. In this therapy a radioactive substance is used which rapidly leaves the blood circulation system and concentrates within the skeletal system and especially within metastized zones. Radioactive phosphorus has been used for more than thirty years for this purpose.</p>
<h3>Radiopharmaceuticals in therapy for joint disease</h3>
<p>Rheumatoid arthritis, also known as inflammatory joint rheumatism, is one of the most widely seen (approximately 1–2 %) of connective tissue diseases.</p>
<p>In this disease, medication in some cases can become ineffective in the long run and can even be the cause of serious side effects. Radionuclide synovectomy (or radiosynovectomy), which is used in some advanced cases of this disease, yields results close to those obtainable by surgical intervention. It has the additional advantages of being less costly, not necessitating the patient’s hospitalization following the therapy and being repeatable.</p>
<p>It can be seen that the use of this blessing for either favorable (good) or unfavorable (bad) purposes depends on human choice, as is the case for all other divine blessings. Thus, it should be our top priority to use for humanitarian causes the blessing of radiation, which has been bestowed on us for our benefit, but which can seem as if it is harmful at first sight.</p>
<h3><b>Notes</b></h3>
<ol>
<li>Al-Bukhari, &#8220;Tawhid,&#8221; 55; Muslim, &#8220;Tawba,&#8221; 14-16, Ibn Maja, &#8220;Zuhd,&#8221; 35.</li>
<li>Muhammad ibn Ahmad ibn &#8216;Uthman al-Dhahabi, Siyar &#8216;Alam al-Nubala’, 25 vols. (Beirut, 1992), 1:150.</li>
<li>Al-Qushayri, Al-Risala, 133.</li>
<li>In other words, one should regard Him as an All-Merciful and All-Forgiving Lord, rather than as an All-Punishing One.</li>
<li>Al-Bukhari, &#8220;Tawhid&#8221;, 15; Muslim, &#8220;Tawba,&#8221; 1; Al-Tirmidhi, &#8220;Dawa&#8217;at,&#8221; 132.</li>
<li>Al-Qushayri, Al-Risala, 134.</li>
</ol>
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		<title>Fasting from the World</title>
		<link>https://fountainmagazine.com/all-issues/2009/issue-67-january-february-2009/fasting-from-the-world/</link>
		
		<dc:creator><![CDATA[Louima Cunningham]]></dc:creator>
		<pubDate>Thu, 01 Jan 2009 00:00:00 +0000</pubDate>
				<category><![CDATA[Issue 67 (January - February 2009)]]></category>
		<category><![CDATA[adam]]></category>
		<category><![CDATA[body]]></category>
		<category><![CDATA[brings]]></category>
		<category><![CDATA[existence]]></category>
		<category><![CDATA[fast]]></category>
		<category><![CDATA[fasting]]></category>
		<category><![CDATA[god]]></category>
		<category><![CDATA[heart]]></category>
		<category><![CDATA[human]]></category>
		<category><![CDATA[hunger]]></category>
		<category><![CDATA[increase]]></category>
		<category><![CDATA[life]]></category>
		<category><![CDATA[lord]]></category>
		<category><![CDATA[love]]></category>
		<category><![CDATA[Perspectives]]></category>
		<category><![CDATA[prophet]]></category>
		<category><![CDATA[repentance]]></category>
		<category><![CDATA[sleep]]></category>
		<category><![CDATA[true]]></category>
		<category><![CDATA[world]]></category>
		<guid isPermaLink="false">http://107.21.79.195/all-issues/2009/issue-67-january-february-2009/fasting-from-the-world/</guid>

					<description><![CDATA[The true fast is fasting with Prophet Adam! Walking with him in the desert of existence with the burning sand under one&#8217;s feet, with the flame of love in one&#8217;s heart, and the heat of search in one&#8217;s chest, and the tears streaming from one&#8217;s eyes! Wandering, searching restlessly for Him, the One and Only, [&#8230;]]]></description>
										<content:encoded><![CDATA[<p>The true fast is fasting with Prophet Adam! Walking with him in the desert of existence with the burning sand under one&#8217;s feet, with the flame of love in one&#8217;s heart, and the heat of search in one&#8217;s chest, and the tears streaming from one&#8217;s eyes! Wandering, searching restlessly for Him, the One and Only, drawn by the pain of separation! In other words, our fasting efforts have to connect us with the first human being, the father of humankind, the Prophet Adam. Our fasting has to draw us to walk in his footsteps, because he was in search of love, he was searching to regain the love, forgiveness and contentment of God the Majestic with his tearful repentance. He had only one goal, one longing, one wish, one thought for forty years, to ask for forgiveness, love and mercy from His Supreme Creator.</p>
<p><span id="more-988"></span></p>
<p>The father of humankind had no eyes and ears for the world, his life was a fasting life walking in the burning desert of human existence. He lived a life of seclusion with his Lord. His life signifies the true khalwat, true asceticism. He was made to leave the exalted station of paradise where the angels prostrated to him. But his pain of separation was not caused by the loss of paradise, the loss of the company of the angels, his loss was the loss of his Beloved!</p>
<p>Therefore, if fasting is not directed toward fasting from the world for the sake of the increase of love for the Lord of the worlds, our fasts are wasted effort and struggle. The result degenerates into a good meal at fast breaking. The opposite of fasting is not luxury, wealth, status, ownership, as the opposite of wealth is not poverty. Wealth, glamour, luxury is the absence of love, which means the opposite of fasting is the absence of the most Graceful, most Merciful! Fasting from the world means to dive into the ocean of God&#8217;s mercy and gain the treasury of intimacy and love. This is our Prophet Adam, who reached the most exalted degree of love, described by Rumi:</p>
<blockquote>
<p>When Adam lapsed, God exiled him from paradise. God said to him, &#8220;O Adam! Since I have held you responsible and punished you for that sin you committed, why did you not dispute with Me? After all, you had an argument. You could have said, &#8216;All is from You, and You make all. Whatever You desire in the world comes to pass, and whatever You do not desire will never come to pass.&#8217; After all, you had such a clear, correct and patent argument. Why did you not give expression to it?&#8221; Adam replied, &#8220;I knew that, but I did not abandon courtesy in Your Presence; love for You did not allow me to reproach You.&#8221;</p>
</blockquote>
<p>This conversation shows the most noble feature of modesty, humility, love and shame or &#8220;haya.&#8221;</p>
<p>Observing the life of Prophet Adam, we learn that the human heart has to be cleansed with two attributes; repentance and muhabba. Repentance opens the door of one&#8217;s helplessness, need, poverty and the recognition of one&#8217;s servanthood and total dependence on the All-Majestic Lord of all the worlds. The recognition of one&#8217;s mistakes, insufficiencies, heedlessness, weakness, incapacities, and imperfections is the crucial point where love starts. Truthful repentance creates modesty or haya and haya is the awareness of love.</p>
<p>The wisdom we can draw from the father of humankind is that without seclusion from the world, there is no love. Love is only sold in the house of human hardship, efforts, fasting, works. We have to see the world as a plane of the hereafter! The fruit of eternity and divine harmony are only earned through struggle in daily life. Prophet Muhammad, peace be upon him, said, &#8220;Struggling makes one witness the Sacred Essence.&#8221; This principle is especially effective in terms of fasting. We fast in the world from the world. We fast with the body to overcome the body. Through our temporal, limited existence, the material self, we can realize our true existence and reach selflessness. The education of the body through fasting is nothing but making matter subtle, making the heavy light, striving towards cleanliness and purity. In short, the body has to become refined by our own efforts up to the point of transforming it into a holy instrument through which God Himself can act as stated in the holy tradition, &#8220;When I love a servant I become the eyes with which he sees and the ears with which he hears&#8230;&#8221;</p>
<p>A wise man said, &#8220;True comfort is freedom from the desires of the lower self! Your prison is your own lower self. As soon as you escape from it, you will live in the comfort of eternity.&#8221; In other words, what makes you free is the abundance of what imprisons you! Fasting is the method to free oneself from the tyranny of one&#8217;s lower self. The wisdom of the fasting month is that you do not fill your stomach with food, so you might see the light of &#8220;marifa&#8221; within yourself! To become the king of our own heart is the result of true fasting! The root of all sicknesses is attachment to the world and the healing for all sicknesses is attachment to the hereafter! With fasting one learns to say no to the world and yes to the hereafter. With the help of fasting one is empowered by the world and enriched by the divine Presence. God&#8217;s Messenger said, &#8220;The one who fasts has two satisfactions. One is when he breaks his fast at the end of the day. The other is when he sees.&#8221; There are numerous levels of fasting, apart from fasting exclusively with one&#8217;s stomach, and the ultimate fasting of truth is the fasting which is not limited to the month of Ramadan, nor any other time. On the way of truth we have to answer to everything with hunger, referring to the famous utterance of the Prophet: &#8220;Knock on the door of hunger.&#8221; Hunger generates the absolute need of creatures for their Creator; hunger burns away impurities and clears the way to the Lord of Majesty and Bounty; hunger is our supreme teacher for all spiritual sicknesses. It is a remedy for all human distress, calamities, fears, depression.</p>
<p>The great saint Jalaladdin Rumi commented on so-called modern man eight hundred years ago:</p>
<blockquote>
<p>You have an escape from God, but not from food. You have an escape from religion, but not from idols. Oh you who cannot bear to be without this despicable world! How can you bear to be without Him who spread it as a carpet? Oh you who cannot be without luxuries and comforts! How can you bear to be without the Generous God?</p>
</blockquote>
<p>The crucial point is this; if we wish to save ourselves from the dangerous and low places of human existence, we have to discover the thirst of our souls. Today, modern societies obviously suffer a great thirst due to the unfortunate fact that the human soul is not attracted by the Water. Humans veil the light of their own sun by their own clouds of unconsciousness. Thus fasting is the perfect means to wake up from our sleep of unconsciousness and our ignorance. Fasting effectively increases our divine thirst! More precisely, it increases the need for the truth! In order to understand our true nature and find the purpose of our lives, we have to occupy ourselves with God. We have to drink from the water of life, we have to eat from the banquet of heaven, and we have to experience the heavenly ascension. There is no other reason why fasting is given to humanity except that it enables us to realize the eternal secret of human existence. When we do not build our lives on belief, we will be lost in moral decay, disorder and ignorance. In other words we will lack humanity.</p>
<p>To conclude, fasting from the world brings us paradoxically closer to the world, penetrating into the dynamic of human life on earth. It brings us closer to ourselves, it brings us closer to our fellow beings, and therefore it brings us closer to our Lord. This is the treasury of fasting-healing from the terror of selfishness, from the lower desires of the flesh, from the darkness of unconsciousness.</p>
<p>***</p>
<p>Oh Lord, turn off the hatred, envy, indifference, lightheartedness, and darkness of our hearts and replace them with affection, love, mercy, compassion, and generosity to our brothers and sisters! Oh Lord, enfold us in the robe of firm belief.</p>
<p>Oh our Lord, increase our immortality and decrease our profanity, increase our spirituality and decrease our materiality, increase our admiration and decrease our calculation.</p>
<p>We ask ourselves how much is the most precious of all books, the holy Qur&#8217;an in our hands, on our lips, in our eyes, in our hearts? How much is the Qur&#8217;an in our lives? Is it just placed on a shelf in our houses or is it not there at all? We ask ourselves how much do we run to do good deeds? How concerned are we to help our fellow beings in need? How much time do we reserve for the service of the poor and sick?</p>
<p>Oh Lord, we are ashamed of the answer to these questions. One of Your greatest servants, the venerable Abdul Qadr al-Jilani never slept at night for forty years! He made his morning prayer with the ablution he had taken to make his night prayer. He read the Qur&#8217;an every night so that sleep should not overtake him. He stood on one foot and leaned against the wall with one hand. He did not change this position until he had recited the whole Qur&#8217;an. When he could not fight sleep himself, he would hear a voice that shook every cell of his body. It would say, &#8220;O Abdul Qadr, I did not create you to sleep. You were nothing. I gave you life. So while you are alive you will not be unaware of Us!&#8221;</p>
<p>O my heart which finds rest in fasting, what a miraculous blessing of healing! What a relief from these constant ego attacks, what a great comfort, what freedom having cleaned the mirror of our hearts from dirt and dust, what a benefit, what a present for my soul having made order and set the barriers for the human kingdom of the body!</p>
<p><em>Rabia Christine Brodbeck is the author of From the Stage to the Prayer Mat: The Story of How a World-Famous Dancer Fell in Love with the Divine.</em></p>
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		<item>
		<title>Cryptography and Codes in Existence</title>
		<link>https://fountainmagazine.com/all-issues/2009/issue-67-january-february-2009/cryptography-and-codes-in-existence/</link>
		
		<dc:creator><![CDATA[Louima Cunningham]]></dc:creator>
		<pubDate>Thu, 01 Jan 2009 00:00:00 +0000</pubDate>
				<category><![CDATA[Issue 67 (January - February 2009)]]></category>
		<category><![CDATA[classical]]></category>
		<category><![CDATA[cryptography]]></category>
		<category><![CDATA[cylinder]]></category>
		<category><![CDATA[decryption]]></category>
		<category><![CDATA[dna]]></category>
		<category><![CDATA[encoded]]></category>
		<category><![CDATA[encoding]]></category>
		<category><![CDATA[encrypted]]></category>
		<category><![CDATA[encryption]]></category>
		<category><![CDATA[form]]></category>
		<category><![CDATA[information]]></category>
		<category><![CDATA[key]]></category>
		<category><![CDATA[letter]]></category>
		<category><![CDATA[living]]></category>
		<category><![CDATA[message]]></category>
		<category><![CDATA[messages]]></category>
		<category><![CDATA[method]]></category>
		<category><![CDATA[methods]]></category>
		<category><![CDATA[protein]]></category>
		<category><![CDATA[Science]]></category>
		<category><![CDATA[word]]></category>
		<guid isPermaLink="false">http://107.21.79.195/all-issues/2009/issue-67-january-february-2009/cryptography-and-codes-in-existence/</guid>

					<description><![CDATA[The confidentiality of information is vital for people, companies and countries. Cryptography develops methods of encoding and decoding information in order to protect it. Cryptography mainly aims to save information and to transfer messages to recipients safely. Cryptography can change a message into a complicated form by applying several different methods. Encoded information can be [&#8230;]]]></description>
										<content:encoded><![CDATA[<p>The confidentiality of information is vital for people, companies and countries. Cryptography develops methods of encoding and decoding information in order to protect it.</p>
<p>Cryptography mainly aims to save information and to transfer messages to recipients safely. Cryptography can change a message into a complicated form by applying several different methods. Encoded information can be resolved only when the receiver applies specific methods to it. Not only does computer cryptography render communication secure but it also gives users secure access to servers.</p>
<p><span id="more-989"></span></p>
<p>Nowadays, cryptography is becoming more and more significant, especially now people transfer their personal, commercial, military or political information to each other on internet. It is easy for someone to get personal information through online shopping sites which are very common today. Therefore, credit card information entered into the website is converted into unintelligible characters through an encryption method so that the credit card number can be transmitted to the server securely. Then, the server can easily retrieve the original form of the credit card number using decryption.</p>
<p>The encryption algorithm includes essential elements known as the &#8220;key.&#8221; Protection of the key is always vital for information security.</p>
<h3><b>History of Cryptography</b></h3>
<p>To find the first examples of cryptography one needs to go back more than 4,000 years in history. For instance, in 2000 BCE the ancient Egyptians used hieroglyphs on the gravestones of their kings to describe their achievements when they were alive. Eventually, the system of hieroglyphs grew too complex to understand. Then people began to use it for encoding. Similarly, Chinese people used ideography, which conveys ideas through symbols, to hide the meaning of words.</p>
<p>There are also encoding examples from ancient Mesopotamia that have similar aspects to those used in Egypt. The Roman emperor Julius Caesar used a type of encryption technique called the &#8220;Caesar cipher&#8221; in which each letter in the plain text is replaced by a letter some fixed number of positions down the alphabet. In the Middle Ages cryptography received a lot of attention from many nations, especially in Europe. In recent years, many different methods have been developed in this field. Therefore, the classical methods are not as useful as they were in the past, especially since the 1970s. Today, more complex mathematical methods have replaced the classical methods of cryptography.</p>
<p>The Arabs were the first to make successful studies of how to decode encrypted messages. Ahmad al-Qalqashandi of Egypt (1355–1418) developed an encryption method which is still used today. This technique is based on a theory of language stability which explores the distribution and frequency of the words in a text. With this method, the frequency of the characters within the encrypted text is compared to the frequency standards in the language; in this way, it is determined what an encoded letter really stands for.</p>
<p>This method is used successfully in decoding messages encrypted by the mono-alphabetic method, which is based on sliding or replacement of a letter by another one.</p>
<p>In 1931, the French obtained documents from a German spy which showed the functions of a code named &#8220;Enigma&#8221; that was going to be used in World War II by the Germans. British mathematicians were then able to decipher the code during the war. Thus, the commands of Hitler could be learned immediately by the Allied Powers. The Allied countries won the war because of their access to the decryption technique. Likewise, the American army gained victory over the Japanese in the Pacific War in the 1940s because American decryption experts, along with their British and Dutch colleagues, were able to decode the system called JN-25 which was being used by the Japanese army.</p>
<p>Technological developments in computer science have enabled us to decode even previously unbreakable ciphers. For instance, an encrypted message which was created in 1977 and which, it was thought could be decoded only 40 quadrillion years later with the help of an algorithm that analyses the known large numbers into their factors, was actually decoded seventeen years later in 1994.</p>
<h3><b>Classical and modern cryptography</b></h3>
<p>Cryptographic methods are divided into two categories: classical and modern. In the classical method, encoding can be done by consistent replacement of a letter by another letter in the same alphabet. For example, if we replace each letter in the word FOUNTAIN by the third following letter it changes into IRXQWDLQ. It can also be done by replacement of a word with another one or replacement of a character by another character. Of course, the recipient of the message must be the only person who knows the decryption method. In that way, for example, the unintelligible word above can easily be changed back to its original form by replacing each word by the letter three places before it in the alphabet. Such encrypted messages can only be decoded by linguistic analyses or after numerous trials. The classical method was invented hundred of years ago, and it has been used since then. Although this method is so simple that it can even be used manually, computers are the only devices which can have maximum security as well as very long keys and complex algorithms for the modern technique.</p>
<p>The &#8220;Spartan cylinder&#8221; is another device used in the classical method. A message is written on a piece of paper rolled around a cylinder with a known diameter. The encrypted message is then detached from the cylinder and sent. The only way to decipher the message is to have a cylinder of the same diameter. If the unrolled paper is re-rolled around a decoding cylinder properly, then the original message is obtained. This method is known to have been used by the Spartans around 600 BCE.</p>
<p>One modern method is called Public-Key Cryptography. In this form of cryptography, the key used to encrypt a message differs from the key used to decrypt it. The public key may be widely distributed while the private key is kept secret. Thus, incoming messages are encrypted with the recipient&#8217;s public key; yet, they cannot be decrypted except with the recipient&#8217;s private key. Hence, the possessor of the private key is the only one who can decrypt the message and read it.</p>
<p>Conversely, in secret-key cryptography, a single secret key is used for both encryption and decryption. One disadvantage of secret-key cryptography is the distribution of the private key since it is always at risk of being acquired by third parties.</p>
<p>If we look at the universe, we can observe similar cryptographic methods in every creation process. For instance, living cells produce protein by deciphering nucleic acids (DNA, RNA), which include encoded genetic information in ribosomes.</p>
<h3><b>The structure of encoded DNA and encryption in protein synthesis</b></h3>
<p>There is divine wisdom in the encoding of DNA and the transference of these codes to ribosomes in the protein-making process. If we compare DNA molecules, which contain the genetic instructions inside living organisms, to a book, the letters in this book can be symbolized by A, T, and G and C. These symbols represent four molecules which are used in the encoding of the genetic program that shapes the basic form of all living organisms. Each human genome is identified with different sums of those letters. For instance, while the sum of genomic letters is approximately 3 billion in mice and human organisms; it is about 4–5 million in a bacteria. Furthermore, when the genome sequences of two humans are compared, the combination difference between the two appears to be only one percent; nevertheless, no human being is exactly like another in appearance.</p>
<p>There are some interesting distinctions between humans and animals in terms of their genome numbers. The various encoding techniques used in DNA are a basic biological mechanism which can also be considered the mystery behind the genetic diversity in the creation of living organisms. If we compare the genome to a program booklet, we can consider the booklet to be a tiny model of the &#8220;Manifest Record&#8221; (Imam al-Mubin) mentioned in the Qur&#8217;an, in which the future lives of all things and beings, including all the principles governing those lives, and all their deeds and the reasons or causes are kept pre-recorded in this world. The instructions and mechanism used in this encoding program are identical in most living beings. This uniformity shows that they are all created by one Almighty being.</p>
<p>Scientists also observe another kind of encoding which helps transmission of the right message to ribosomes during the protein-making process. The main idea is that unlike the base-pairing of DNA, in messenger RNA (mRNA) the complementary base to adenine is not thymine, as it is in DNA, but rather Uracil, and also that every three nucleotides (a codon) carry information of one amino acid. For example, while codons in DNA appear as &#8220;AAT, GCC, GAT, GTA,&#8221; they appear as &#8220;UUA, CGG, CUA, CAU&#8221; in mRNA. Here the main goal is not to keep the information safe against the third parties as in normal encryption, but rather to transmit the message properly and preserve the diversity of living beings.</p>
<p>Developments in the area of cryptography do not only provide confidentiality of information, but they also shed light on our understanding of God&#8217;s wonderful creation in the world of living creatures. All these extensive and essential practices, including the encoding of the information by the four letters of DNA, proper transmission of this encoded information to the cells, and the necessary synthesis in the cell, prove that the All-Knowing and Omnipotent God has great wisdom in all His actions in the Universe.</p>
<h3><b>References</b></h3>
<ul>
<li>Protein Synthesis, http://www.emc.maricopa.edu/faculty/farabee/BIOBK/BioBookPROTSYn.html.</li>
<li>Selim Aydın, &#8220;Gen Haritası Neler Söylüyor?&#8221;, Sızıntı, June 2001, no. 269.</li>
<li>Quantum Cryptography: Privacy Through Uncertainty, October 2002 http://www.csa.com/discoveryguides/crypt/overview.php 1.5.2006.</li>
<li>Larry Petterson, Bruce S. Davie, Computer Networks: A System Approach, Morgan Kaufmann Publishers, 2000, 568–615.</li>
</ul>
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		<title>Science in the Islamic world: an interview with Nobel Laureate Ahmed Zewail</title>
		<link>https://fountainmagazine.com/all-issues/2009/issue-67-january-february-2009/science-in-the-islamic-world-an-interview-with-nobel-laureate-ahmed-zewail/</link>
		
		<dc:creator><![CDATA[The Fountain]]></dc:creator>
		<pubDate>Thu, 01 Jan 2009 00:00:00 +0000</pubDate>
				<category><![CDATA[Issue 67 (January - February 2009)]]></category>
		<category><![CDATA[ahmed]]></category>
		<category><![CDATA[book]]></category>
		<category><![CDATA[don]]></category>
		<category><![CDATA[Education]]></category>
		<category><![CDATA[egypt]]></category>
		<category><![CDATA[good]]></category>
		<category><![CDATA[knowledge]]></category>
		<category><![CDATA[life]]></category>
		<category><![CDATA[Matter & Beyond]]></category>
		<category><![CDATA[mosque]]></category>
		<category><![CDATA[muslim]]></category>
		<category><![CDATA[muslims]]></category>
		<category><![CDATA[nobel]]></category>
		<category><![CDATA[passion]]></category>
		<category><![CDATA[people]]></category>
		<category><![CDATA[prize]]></category>
		<category><![CDATA[Science]]></category>
		<category><![CDATA[thinking]]></category>
		<category><![CDATA[world]]></category>
		<category><![CDATA[zewail]]></category>
		<guid isPermaLink="false">http://107.21.79.195/all-issues/2009/issue-67-january-february-2009/science-in-the-islamic-world-an-interview-with-nobel-laureate-ahmed-zewail/</guid>

					<description><![CDATA[For over a hundred years, the Nobel Prize has been awarded for the highest achievements in physical sciences, peace and literature. In this period, only two scientists from the Muslim world have qualified for the prize in physical sciences: Abdus Salam of Pakistan in physics (1979) and Ahmed Zewail of Egypt in chemistry (1999). Abdus [&#8230;]]]></description>
										<content:encoded><![CDATA[<p>For over a hundred years, the Nobel Prize has been awarded for the highest achievements in physical sciences, peace and literature. In this period, only two scientists from the Muslim world have qualified for the prize in physical sciences: Abdus Salam of Pakistan in physics (1979) and Ahmed Zewail of Egypt in chemistry (1999). Abdus Salam passed away in 1996, making Ahmed Zewail the only living Nobel Laureate in physical sciences in the Muslim world.</p>
<p>Science in the Islamic world flourished between the eighth and the eleventh century CE. If there had been a Nobel Prize in that period, on most occasions it would have gone to a Muslim scientist, but the situation is quite different today. Why did scientific discovery decline in the Muslim world? What should Muslims do to regain the excellence in science that they once had? What are the current prospects in this respect in the Islamic world? To find answers to these questions, we talked to Ahmed Zewail about his own fascinating journey to the Nobel Prize and his views about science in the Islamic world.</p>
<p><span id="more-990"></span></p>
<h3><b>About Professor Ahmed Zewail </b></h3>
<p>Professor Zewail completed his undergraduate education the University of Alexandria, Egypt, and his doctorate at the University of Pennsylvania. His honors include more than a hundred prizes, awards, orders of merit, and orders of state from around the world. Professor Zewail was awarded the 1999 Nobel Prize in Chemistry for his pioneering developments in the field of femtoscience, making it possible to observe the movement of the individual atoms in a femtosecond, that is, a millionth of a billionth of a second.</p>
<p>Professor Zewail is also renowned for his public lectures and writings on science and technology, education and world affairs, and for his tireless efforts to help the have-nots. In his recent biography Voyage through Time-Walks of Life to the Nobel Prize, he relates his life and work up to his receipt of the Nobel Prize, and he suggests a concrete course of action for the world of the have-nots and a new vision of world order.</p>
<p><b>In one of your recent commentaries in the Independent newspaper, you quote a beautiful verse from the Qur&#8217;an &#8220;Indeed! God will not change the good condition of the people as long as they do not change their state of goodness themselves&#8221; (Rad 13:11). Why did you quote this verse?</b></p>
<p>If you look at the height of Muslim achievement, Muslims were then acting individually as good Muslims, meaning that they read the Qur&#8217;an and they thought of the good things they were supposed to do, for example, to acquire knowledge. As you know, the first word that was revealed of the Qur&#8217;an was &#8220;read&#8221; and this respect for learning is repeated everywhere to the point that scientists of magnitude are almost put on the level of prophets in many ways in the Qur&#8217;an. So the Muslims of the early days recognized the importance of acquiring knowledge, but frankly, nowadays because of the deterioration that has taken place among the Muslims, we have become so possessed by the idea of conspiracy theories that we like to blame other people for our decline.</p>
<p>There is no doubt in my mind that there are many external forces that have contributed to our decline, but the truth of the matter is that it falls to us to do better. I am proud to see any Muslim, young or old, achieving at the highest level. In every case I see, I realize that these people did not let external things stop them and they have gone on to achieve. So I can summarize the reasons for our general decline, and I&#8217;m taking it verbatim from the Qur&#8217;an, as being our own problem.</p>
<p><b>In your book, you say, &#8220;The Sidi Ibrahim al-Desuqi mosque was very important in my life because it defined my early childhood. I used to go to the mosque to study… In Islam, the mosque is not just for prayer, but it is also for scholarship&#8221; (p. 15). Do you think this remains true?</b></p>
<p>Unfortunately, in recent years the mosque has been used by people who are not enlightened about Islam to propagate their point of view, not Islam&#8217;s point of view, so a political component has grown in it. It&#8217;s a lack of enlightenment on these people&#8217;s part. Growing up in Egypt, I remember Al-Azhar as being one of the centers of enlightenment of the world. Now, I didn&#8217;t reach Al-Azhar but on the other hand, even in my own town there was a mosque where we used to go and see the Imam, and the main thing he would try to tell us as young boys was that &#8220;you&#8217;ve got to achieve in knowledge; you&#8217;ve got to be the best doctor or the best engineer.&#8221; We used to study in the mosque. It was marvelous. I mean, we would meet as young people in the mosque-of course, we would pray-but then after we had prayed, we would all sit down and look at our school books and our study notes, and so it was a center of gravity. In fact, in my book I say that the mosque was the center of gravity for the whole town.</p>
<p><b>In a number of places in the book you talk about the importance of &#8220;having a passion&#8221; to achieve something. Have we, as Muslims, lost our passion for science and scholarship? If so, how can we reignite this in the younger generations? </b></p>
<p>I don&#8217;t think we have lost our passion, no. Especially since the Nobel Prize, I have spoken all over the Muslim world from Cairo to Malaysia, from Istanbul to Lebanon, and thousands of people come to my lectures. What I have found is that young people are hungry to achieve-they have that passion for achievement. The problem, unfortunately, is that they are not in the right system to make them realize their potential. So, I always say that the biggest asset right now in the Muslim world is actually its human capital. If this is used in the right way and we rebuild the old centers of excellence to attract the best minds, I believe that the Muslim world can undergo a huge transition. There are political issues, and a lot of political problems, but I don&#8217;t think that the problem with the Muslim world is lack of economic resources or lack of human capital. We have both types of resources.</p>
<p><b>Some people argue that religion and science cannot coexist. What is your take on this issue?</b></p>
<p>Some of the best minds in the world are religious people. So the claim that in order to be a rational scientist, by definition, you must not believe in a religion is a bit naïve. It seems to me also that it is quite strongly dogmatic. Religion is very important for people for a variety of reasons and I don&#8217;t see a conflict between the two.</p>
<p><b>What do you think about The Fountain, especially from the perspective of promoting the coexistence of science and religion?</b></p>
<p>Let me tell you why I like The Fountain and, as you know, I subscribe to it. I thank you for introducing me to it. The reason I like The Fountain is that it tends to explain things with reason and in a rational way, but it doesn&#8217;t stop the writers utilizing excerpts from the Qur&#8217;an that support their argument. But I need the rationality. It seems to me that the fact that the magazine uses this approach and respects the values of reason and knowledge and science will make it more effective.</p>
<p><b>Do you see the success of people like yourself and Abdus Salam as exceptional individual cases, or as early signs of a revival in the Islamic world? </b></p>
<p>Not early signs of revival, I always say that I&#8217;ve been fortunate to gain two things from my early childhood and my adulthood. First, I&#8217;m very proud of the value system that I was given by my family and the way I grew up as a Muslim in Egypt. I did not grow up in a system where I got into drugs and violence; I had never seen a gun before I left Egypt. The values that I acquired from my family were extremely important and gave me confidence for what I have achieved in my life. But besides that and importantly, I did get a good education in Egypt up to the level of university. What America has given me is a system of appreciation and opportunity, and that is what we are lacking in the Muslim world. If I had stayed in Egypt, I would not have been able to do what I have done because of this lack of opportunity and appreciation for achievement.</p>
<p>Let me give you another example; part of the Muslim world is very poor, but there is a big part of it that is very rich. The very rich part has not invested in the human capital. On the other hand, on a recent trip to Malaysia, I met Dr. Mahathir Mohammed, the former prime minister. Now, Malaysia is a country 60% of whose population is Muslim. It is possible to see the results of the experiment that has been carried out in Malaysia. Malaysia has made a transition-its GDP is much higher than most Muslim countries, and they are moving into the developed world-and this has been done in a country with a 60% Muslim population. What they did was to invest in education. Dr. Mohammed told me that, in order to make the transition from an almost underdeveloped economy depending on tin and rubber into one producing micro-electronics and the like, they invested as much as 20% of the GDP in education. So I think the formula is very, very clear in terms of what you can get out of this.</p>
<p><b>In one of your recent newspaper articles, you mention that one of the primary goals of education in the Muslim world should be &#8220;to promote critical thinking.&#8221; What do you mean by critical thinking?</b></p>
<p>Young people are very confused right now; they don&#8217;t know what is wrong and what is right. What I mean by critical thinking is that we all have been given the gift of the mind to think, so we should educate the people to think about what&#8217;s morally right and what&#8217;s morally wrong, but let them also think about, for example, science. There is nothing wrong with studying different points of view about what&#8217;s going on in the universe. If you are a good Muslim, it&#8217;s up to you-you have the garden of knowledge and you choose what you think. But to intimidate people and say things like &#8220;You cannot do this, don&#8217;t do that, don&#8217;t read about this…&#8221; that&#8217;s not critical thinking! That&#8217;s not what we need.</p>
<p>The Prophet would not allow that forbidding attitude today in my opinion because he was progressive in his thinking; his is a message of peace and critical thinking. In the twenty-first century now, people are thinking about having colonies on the moon, people are thinking about dissecting genes and opening up a whole new world of treatment for molecular diseases, people are thinking about watching atoms on the femtosecond timescale. And we as Muslims need to keep up with this.</p>
<p><b>You say in the book, &#8220;We should not divide the world into ‘us&#8217; and ‘them&#8217; and must not allow for the creation of barriers through slogans such as the ‘clash of civilizations&#8217; or the ‘conflict of religions&#8217;-we need dialogue not conflict or clashes!&#8221; What do you think is the best way of achieving this dialogue? </b></p>
<p>Let me say, and perhaps I am putting this too strongly, that I think there is ignorance on both sides. There is a large proportion of the population in the Muslim world that I feel is not informed; they are not sophisticated enough to speak to the mind of the west. On the other hand, in the west they have neglected to learn about the Muslim world for a long time and treat it as if there must necessarily be a conflict with Muslims. With this kind of attitude on both sides, we can never get into dialogue.</p>
<p>You know, when I first came to the United States, they used to call the Japanese &#8220;the Japs&#8221; and the Chinese &#8220;the Red Chinese&#8221; and so on. Nowadays, because there has been a dialogue and we are starting to understand different cultures, there are Chinese and Japanese restaurants all over the country. China has McDonalds… But we have not done this as far as the Muslim world is concerned. For example, what do they know here in the US about Turkish culture? It could be a start to take the story of the Ottoman Empire and let them learn about the baklava and Turkish hospitality. The same thing is true for the Arabs. We have not done a good job, and on their side I must say they have neglected for a long time to develop any knowledge of the Muslim world or to understand faith or the strong feelings of the Muslims about their faith.</p>
<p>On the individual level, both sides need to be exposed to each other more, and here exchange programs and all kinds of education centers can help. But I tend to put more blame on the Muslim world because we have not taken the initiative to communicate about ourselves as much as the rest of the world does.</p>
<p><b>You live in California with your wife and two children. How do you keep the balance of work and family life and other personal issues?</b></p>
<p>I have been fortunate in this because my wife&#8217;s father is a professor and she has seen what it means for somebody to work hard, so she knows. She has said many times that my first love is my work. However, having said that, I think my children will say that I am a caring father. I try to balance things. For example, I always spend Sundays with my children; even if I&#8217;m staying home reading, they are around me. I see them, I go with them to soccer games, and so on. If you don&#8217;t, if you take it to the extreme and you claim that your work is everything, then you have weakened a whole corner of your life, and I don&#8217;t believe you will have the strength to do many other things in life.</p>
<p><b>What is it that keeps you so motivated even after getting a Nobel Prize? Does your background as a Muslim play a role in this?</b></p>
<p>I think it is a composite of things. First of all, God created me with a passion for whatever I do. If I read a book, I have the passion to finish it. The other thing is my background, as you said. When I came to the United States, I was challenged. As I mention in my book, there were political barriers, there were cultural barriers and scientific barriers. So I was challenged to show that somebody with my background, someone who is a Muslim and grew up with mosques and everything like that can achieve something.</p>
<p>Nowadays, I also try to go beyond the Nobel Prize, and I ask myself if I can help people and if I can help science in general. Perhaps also because of my upbringing and the mosque, I have faith. So I think it&#8217;s that kind of faith in life, in the universe, in myself, and in God, of course-all of this makes me who I am.</p>
<p><em>Nuh Gedik is an Assistant Professor of Physics at Massachusetts Institute of Technology. Before moving to MIT, he worked as a postdoctoral scholar at Caltech in the research group of Prof. Ahmed Zewail.</em></p>
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		<title>Interfaith Dialogue and Alliance Principles in the Works of Said Nursi</title>
		<link>https://fountainmagazine.com/all-issues/2009/issue-67-january-february-2009/interfaith-dialogue-and-alliance-principles-in-the-works-of-said-nursi/</link>
		
		<dc:creator><![CDATA[Louima Cunningham]]></dc:creator>
		<pubDate>Thu, 01 Jan 2009 00:00:00 +0000</pubDate>
				<category><![CDATA[Issue 67 (January - February 2009)]]></category>
		<category><![CDATA[activities]]></category>
		<category><![CDATA[alliance]]></category>
		<category><![CDATA[conflict]]></category>
		<category><![CDATA[dialogue]]></category>
		<category><![CDATA[evil]]></category>
		<category><![CDATA[god]]></category>
		<category><![CDATA[good]]></category>
		<category><![CDATA[interfaith]]></category>
		<category><![CDATA[islam]]></category>
		<category><![CDATA[members]]></category>
		<category><![CDATA[muslims]]></category>
		<category><![CDATA[nursi]]></category>
		<category><![CDATA[outlook]]></category>
		<category><![CDATA[people]]></category>
		<category><![CDATA[principle]]></category>
		<category><![CDATA[principles]]></category>
		<category><![CDATA[religions]]></category>
		<category><![CDATA[sincere]]></category>
		<category><![CDATA[twentieth]]></category>
		<category><![CDATA[works]]></category>
		<guid isPermaLink="false">http://107.21.79.195/all-issues/2009/issue-67-january-february-2009/interfaith-dialogue-and-alliance-principles-in-the-works-of-said-nursi/</guid>

					<description><![CDATA[Said Nursi (d. 1960) was one of the pivotal Muslim scholars of the twentieth century who supported the idea of interfaith dialogue and alliance. He thought that in the face of the difficulties of the twentieth century in terms of religious beliefs and practices, Muslims needed to establish consensus not only among Muslims, but also [&#8230;]]]></description>
										<content:encoded><![CDATA[<p>Said Nursi (d. 1960) was one of the pivotal Muslim scholars of the twentieth century who supported the idea of interfaith dialogue and alliance. He thought that in the face of the difficulties of the twentieth century in terms of religious beliefs and practices, Muslims needed to establish consensus not only among Muslims, but also with Christians. He states in his works (The Risale-i Nur Collection) that &#8220;The people of religion and truth need to unite sincerely not only with their own brothers and fellow believers, but also with the truly pious and spiritual ones among the Christians, temporarily refraining from the discussion and debate of points of difference in order to combat their joint enemy-aggressive atheism.&#8221;</p>
<p><span id="more-991"></span></p>
<p>It is quite interesting to find that although Nursi clearly states the necessity of interfaith alliance in the Risale-i Nur, and consequently encourages his followers to practice dialogue to establish this alliance, he does not dedicate any section of the Risale-i Nur to the principles of this interfaith dialogue and alliance. In other words, Nursi never titled any part of his works &#8220;The Principles of Interfaith Dialogue and Alliance.&#8221; Hence, the present article inquires whether Nursi simply ignores the principles of interfaith dialogue and alliance or whether there are implicit interfaith principles in his works.</p>
<p>It is my claim that it is possible to find implicit interfaith principles in the works of Nursi, and that the Twentieth and Twenty-First Gleams and the Twenty-Second Letter are especially good sources for these principles. In these sections, Nursi mainly deals with the different reasons for conflict among Muslims and teaches them his conflict resolution principles to end these conflicts with peaceful alliance. Therefore, it is easy for us to extract the principles of interfaith dialogue and alliance from these sections by paraphrasing Nursi&#8217;s conflict resolution principles in the context of interfaith dialogue because most of the principles in these sections are not related specifically to Islam, but to human nature in general.</p>
<p>Before presenting the list of paraphrased conflict resolution principles in the context of interfaith dialogue and alliance, we would like to demonstrate an example of paraphrasing: For instance, in the Twentieth Gleam, Nursi advises the following principle to resolve a conflict between different Muslim groups: &#8220;Adopt the just rule of conduct that the follower of any right outlook has the right to say, &#8220;My outlook is true, or the best,&#8221; but not that &#8220;My outlook alone is true,&#8221; or that &#8220;My outlook alone is good,&#8221; thus implying the falsity or repugnance of all other outlooks.&#8221; Although the context of this principle is the interactions between Muslims, it is perfectly right to practice this principle in the interfaith context because it is not related to Islam, but to human nature in general. Consequently, we can paraphrase this principle as follows: In dialogue activities, as Muslims, we can believe or even say that Islam is the right religion or even preferable to that of other religions, but we do not have right to say that other religions have no right in them at all. Similarly, in dialogue activities, Christians can believe or even say that Christianity is the right religion or even preferable to that of other religions, but they do not have right to say that other religions have no right in them at all.</p>
<p>After introducing this example, we can list the paraphrased interfaith principles from Twentieth and Twenty-First Gleams and the Twenty-Second Letter:</p>
<p>1. In our dialogue activities, as Muslims, we should only aim for our Lord&#8217;s good pleasure, not the acceptance of the members of other religions because &#8220;if Almighty God is pleased, it is of no importance even should the whole world be displeased.&#8221;</p>
<p>2. God commands in the Qur&#8217;an (Baqara 2:41), …do not sell My Revelations for a trifling price (such as worldly gains, status, and renown). Therefore, in dialogue activities, we should not water down our religious rules and dignity.</p>
<p>3. Human self is prone to make mistakes and deviate from the right path. Therefore, while dialoging with others, we should not trust our selves but God and always seek his help and forgiveness:</p>
<p>Yet I do not claim my self free of error, for assuredly the human carnal soul always commands evil, except that my Lord has mercy (which saves us from committing evil acts). (Yusuf 12:53)</p>
<p>4. If we want to dialogue with the members of other religions, we should accept them in their position and not criticize their religious beliefs and practices. If we like to be respected in our own beliefs, we should respect the beliefs of others. Similarly, in dialogue meetings, we should not excite the envy of the members of other religions by displaying or implying superior virtues.</p>
<p>5. Our primary aim in dialogue activities is God&#8217;s good pleasure and his help. Faith alliance is our secondary aim. In other words, we seek faith alliance because it attracts God&#8217;s help and support to us. Therefore, if we cannot establish faith alliance with the members of other faiths after all of our sincere efforts, we should not be disappointed. For God is the helper of his sincere servants and no alliance can be superior to God&#8217;s alliance.</p>
<p>6. In dialogue events, our actions should always be based on positive motives. That is to say, what motivates our actions should be the love of our own outlook, not the enmity of others&#8217; outlooks. We organize or participate in dialogue events to represent our outlook, not to diminish the outlook of others.</p>
<p>7. In dialogue activities, by focusing on commonalities such as a shared land, a shared language, our common humanity, universal needs and fears, and so on, we will recognize again that what we have in common far exceeds what sets us apart from each other.</p>
<p>8. Because we need unity and inclusion within Muslims and among the People of the Book far more than division and exclusion, let us for now leave aside discussion of the issues that divide us.</p>
<p>9. In our dialogue activities, we should keep in mind that unity among Muslims and the People of the Book attracts for us the help of our Creator against irreligion.</p>
<p>10. The aim of interfaith dialogue is not to argue with the members of other religions. In order to refrain from argumentation, we should know that one who prevails in an argument finds himself in a dangerous position in comparison with his partner, first because he might fall into arrogance in his heart, and second because he may learn nothing new from the discussion. On the other hand, his partner learns new knowledge and his heart is safe from arrogance.</p>
<p>11. In our dialogue activities, we should seek sincere religious people because the people who are sincere in their religion will most probably be sincere in their dialogue with us as well.</p>
<p>12. If we see any hostility from the people that we dialogue with, we should remember the following principle: &#8220;If you wish to defeat your enemy, respond to his evil with good. For if you respond with evil, enmity will increase, and even though he will be outwardly defeated, he will nurture hatred in his heart, and hostility will persist. But if you respond to him with good, he will repent and become your friend.&#8221;</p>
<p>13. While we dialogue we should keep in mind that people all have different characters and one bad character in a group does not mean that all the people of that group have a similar character. In other words, it would be wrong to generalize one person&#8217;s mistake to the whole community. The Qur&#8217;an says, …no soul, as bearer of burden, bears (and is made to bear) the burden of another.&#8221; (Fatir 35:18)</p>
<p>14. Similarly, one negative aspect of a person does not necessitate that the person is bad as whole.</p>
<p>15. In dialogue activities, all that we say should be true, but we should not say all that is true. For one of insincere intention may sometimes take unkindly to advice, and react to it unfavorably.</p>
<p>16. In times when evil actions prevail, what could we need more than unity, friendship, and inclusion?</p>
<p>17. In times of conflict of opinions, we should act in a positive way, not a negative one. That is to say, we should strive to promote and diffuse our own belief, not seeking to tear down and destroy that of the other, but rather to improve and reform it.</p>
<p>18. In dialogue activities, we should remember that insisting upon consensus in our methods and approaches after finding agreement upon our aims and goals might be a fruitless wish.</p>
<p>19. At every stage of a dialogue activity, the following principle must be our guide: Love for the sake of God, dislike for the sake of God, judge for the sake of God.</p>
<p>In conclusion, we could say that although Nursi does not state interfaith principles explicitly, it is possible to find them mentioned implicitly in The Risale-i Nur and the above list is a good enough source for carrying out any dialogue interaction in a fruitful way.</p>
<p><em>Suleyman Eris is the author of Islam: A Brief Guide – Belief and Practice.</em></p>
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		<title>Fethullah Gulen and the Contribution of Islamic scholarship to Democracy</title>
		<link>https://fountainmagazine.com/all-issues/2009/issue-67-january-february-2009/fethullah-gulen-and-the-contribution-of-islamic-scholarship-to-democracy/</link>
		
		<dc:creator><![CDATA[Louima Cunningham]]></dc:creator>
		<pubDate>Thu, 01 Jan 2009 00:00:00 +0000</pubDate>
				<category><![CDATA[Issue 67 (January - February 2009)]]></category>
		<category><![CDATA[consultation]]></category>
		<category><![CDATA[culture]]></category>
		<category><![CDATA[Culture & Society]]></category>
		<category><![CDATA[democracy]]></category>
		<category><![CDATA[democratic]]></category>
		<category><![CDATA[fethullah gulen]]></category>
		<category><![CDATA[government]]></category>
		<category><![CDATA[gulen]]></category>
		<category><![CDATA[human]]></category>
		<category><![CDATA[islam]]></category>
		<category><![CDATA[islamic]]></category>
		<category><![CDATA[law]]></category>
		<category><![CDATA[legal]]></category>
		<category><![CDATA[life]]></category>
		<category><![CDATA[people]]></category>
		<category><![CDATA[political]]></category>
		<category><![CDATA[rights]]></category>
		<category><![CDATA[societies]]></category>
		<category><![CDATA[world]]></category>
		<guid isPermaLink="false">http://107.21.79.195/all-issues/2009/issue-67-january-february-2009/fethullah-gulen-and-the-contribution-of-islamic-scholarship-to-democracy/</guid>

					<description><![CDATA[Since the fifth century BCE, democracy has been discussed by political theorists, philosophers and members of diverse societies and cultures. Although it is commonly accepted that democracy as a form of government originated in Ancient Greece, many other nations, groups and cultures have contributed significantly to its evolution. As hopes of change for the better [&#8230;]]]></description>
										<content:encoded><![CDATA[<p>Since the fifth century BCE, democracy has been discussed by political theorists, philosophers and members of diverse societies and cultures. Although it is commonly accepted that democracy as a form of government originated in Ancient Greece, many other nations, groups and cultures have contributed significantly to its evolution. As hopes of change for the better are high all over the world today, it is timely and illuminating to consider perspectives raised in different cultures. The modern tendency is to view democracy as a set of political traditions, particular institutions, and cultural assumptions. But this notion of democracy runs into problems because the world is a culturally diverse place and no single culture has the monopoly on democratic ideas and practice (Gulen in Unal and Williams, 2000:147-9). Needs, expectations, aspirations and problems related to human behavior, community life, faith and culture, and law and order, vary from land to land and time to time. In view of the debates raised in recent years over the practice of democracy in Muslim countries and cultures, this article will consider the forms, theory, history and possible future of democracy in the light of the views of a influential, contemporary Turkish intellectual and Islamic scholar, Fethullah Gulen.</p>
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<h3><b>Variation in forms of democracy</b></h3>
<p>Although it is common to discuss democracy as if it is problematic only in the Muslim world, in reality democracies all over the world have to deal with a number of controversial issues about the diverse forms of government, varieties of representation, the types of freedom citizens require or demand, the unlegislated distribution of political power, uneven separation of powers, and the breach of the system of rule by the accumulated powers. (Diamond, 2008: 17-24, 30-33)</p>
<p>Gulen&#8217;s intellectual contribution to the global discussion of democracy, which is determined by his adherence to Islamic values, is not limited to an analysis of democracy&#8217;s value and meaning for individuals and societies. In addition, he examines how democracy is affected by the crises which people and systems undergo, as well as the complexities of life in modern industrialized societies, and the contraction in the space available for individual and collective expression of cultural, moral and spiritual values. (Cetin, 2008: 226-30)</p>
<p>According to Gulen the understanding of democracy and human rights within the theoretical heritage of Islam is not dogmatic but it centers around values such as compromise, stability, the protection of the life, honor and dignity of the human being, justice, equity, dialogue, and consultation. Islamic political theory is flexible and does not bind Muslims by any rigid limits in the choice of concrete forms of government and political system. The main principle in Islamic political theory is the implementation of three fundamental values: equality, justice and consultation. The forms and means of enactment of these are vested in the hands of the community. Thus, the actual realization of the three pillars can and must take into account the conditions of Muslims&#8217; lives, their traditions, cultural preferences, and other factors. Gulen argues that the social, cultural, political and historical aspects of societies, should be taken into account in the development of democracy in the entire world.</p>
<p>Observers discussing the compatibility between Western and Muslim perspectives on democracy and human rights sometimes make the error of attacking &#8220;Islam&#8221; and demanding its reform, instead of commenting on the approaches or methods of particular activists, regimes or countries and reforming those. Some observers even claim Islamic principles and institutions directly contradict democratic values in their modern meaning, and so any step by Muslim societies towards the establishment of democracy must be accompanied by rejecting Islamic political and legal traditions. At the other extreme, ideologically motivated Muslims claim to have the only correct understanding of Islam, and that Islamic fundamentals of power, politics and believers&#8217; rights have nothing in common with Western democratic institutions. These extremists often argue that &#8220;the power of the people&#8221; is alien to Islam, which puts forward the principle of the supremacy of Islamic law instead. (Sykiainen, 2007: 122-3)</p>
<p>In fact, the concepts advanced in this type of argumentation are taken out of the whole context of Islamic thought and its socio-political heritage and are addressed to less well-educated Muslims (and others) in order to justify political extremism. Nevertheless, within both traditional and modern Islamic political and legal thought, there are several different perspectives on government which are more genuinely representative of the Islamic legal tradition and which do not justify extremism. (Gulen, 2004:220; also &lt;http://en.fgulen.com/a.page/press/interview/ a1203.html&gt;).</p>
<p>Islamic jurisprudence embodies the divine revelation, the art of lawyers, local and global cultures, and global relationships. Islamic law and the legal system, its common principles and the majority of its concrete norms are similar to the fundamental ideas and particular provisions of other legal systems. Islamic legal culture has always cooperated closely with and been receptive to other legal cultures. In this sense, Islamic law is of benefit not only to Muslims but to the whole of humanity. Over many centuries a great variety of views on the fundamentals of the executive and the legislature have developed within Islamic culture, and diverse notions of the relations between the state and the individual have been elaborated. (Sykiainen, 2007: 119-132)</p>
<p>One of the key features of the Islamic understanding of democracy is the concept of shura (collective and community consultation). Without any qualification or limitation, all members of a community are eligible to give or request consultation on any matter, except one covered by a clear-cut revelation from God. Consequently, all political matters concerning the selection of the ruler, the structure and shape of the government, the form of political system, the running of the government and of the various affairs of the state, and all other related matters are to be decided by consultation through the participation of all the members of the community. (Gulen, 2005: 43-58)</p>
<p>In public and government affairs collective consultation is concerned with two main issues: the selection of the head of state and running of the government together with reviewing the legality and propriety of governmental and presidential actions. On the selection of the head of state, collective consultation is flexible and adopts various forms. Elections, whether direct or indirect, are considered to be an Islamic method of selecting the head of state or members of the legislative body which satisfies the consultation process. With regard to the running of the government and control over the legality and propriety of the executive&#8217;s actions, Islamic law is also very flexible. The establishment of a representative body through direct or indirect elections is compatible with Islam and is a good application of community and collective consultation. In addition to their reviewing authorities, representative bodies may be empowered to legislate on different matters provided that such regulations do not violate any unambiguous and clear-cut principle or rule of Islamic injunctions. If democracy is the government of the people by the people for the people, shura is a process which guarantees that all affairs of the people are decided by the people and for their interests. So, the basics of democracy and the fundamentals of shura in the political field are not opposed. (Gulen, 2004:223; Sykiainen, 2007:110, Cetin 2008: 218; Gulen, 2005: 43-58)</p>
<p>This genuine Islamic idea is one of the most basic human rights and a means of protecting and preserving all other human rights under Islamic law, especially the right to equality, the freedom of thought, and the right to express oneself freely in order to correct or demand the correction of what is not right, even if it is something committed by the highest officials, including the head of state. State officials and authorities do not have political immunity while in office in Islam. (Gulen, 2006)</p>
<h3><b>Law, order and, human rights</b></h3>
<p>Gulen analyzes the different rights recognized in Islam, including freedom of religion and belief, thought and expression, to own property and the sanctity of one&#8217;s home, to marry and have children, to communicate and to travel, and the right to an unimpeded education. He underlines that the principles of Islamic jurisprudence are based on these and other rights, all of which have now been accepted by modern legal systems, such as the protection of life, religion, property, family life, and intellect, as well as the basic understanding of the equality of people, which is based on the fact that all people are human beings, and subsequently, the rejection of all racial, color, and linguistic discrimination. (Ünal and Williams, 2000:135-8)</p>
<p>Every single right must be respected in Islam. In particular, the right of an individual cannot be violated for the interest of the community. This idea is central to the concept of human rights in Islam and the interpretation of Islamic tradition with regard to this issue. Gulen recalls that if there are nine criminals and only one innocent person on a ship, in order to punish the criminals, Islam does not permit the sinking of that ship because of the innocent person. Though this may sound utopian today considering the mass and &#8220;collateral&#8221; damage caused by modern nations at war, Gulen argues that the bar should be set at the highest possible level for democracy and every effort to reach that level should be attempted. (Gulen, 2006; also personal correspondence, 08.11.2008).</p>
<p>Gulen underlines that people everywhere always demand freedom of choice within their beliefs, that is, in the way they run their affairs and in their expression of spiritual and religious values. He stresses the separation of the eternal and the evolving judgments (ijtihad) of Islamic jurisprudence. Specifically, political affairs in general and democratic institutions and human rights in particular are covered by Islamic legislative provisions which can relate and respond to the needs of changing circumstances and times. Gulen points out that democracy will continue to evolve and refine itself in the future. Islamic principles of equality, tolerance, and justice can help in this regard, provided that the injunctions of the Qur&#8217;an and the Sunna as well as any definite judgments of Islamic law are re-examined and restored in the light of advancing knowledge and changes in societies. (Sykiainen, 2007: 129-30)</p>
<p>It is possible to envisage a kind of democracy with a spiritual dimension. It is a democracy which contains respect for and observance of human rights and freedoms, including freedom of speech, expression and religion, a democracy which prepares the necessary conditions for people to live and practice as they believe, which renders people able to fulfill their wish and need for eternity, and which takes or deals with human beings as a whole with regard to their all material and immaterial needs. For, human life does not start and end with life in this world; the world is only a temporal, transit station, and people are ceaselessly moving toward their eternal abode. The system that governs them must not ignore or neglect this crucial matter. We therefore have to seek ways to sophisticate and humanize democracy. No such stage or democracy has been attained yet, in east or west, north or south, but we can aspire to and work for such an aim. (Gulen, 2006; Gulen in Saritoprak and Ünal, 2005: 452)</p>
<h3><b>Democratic culture </b></h3>
<p>In Gulen&#8217;s view, therefore it is vital to encourage the building of a strong civil society in order to have and retain a ‘culture&#8217; of democracy, and this can only be done through sound education. In a democracy, where people are entitled to freedom of speech, expression, religion, and the right to sell their labor, and other such rights, every individual should know what kinds of rights they have and what authority, weight and say they have in state and government affairs. (Gulen, 2006; Cetin, 2008: 216-20)</p>
<p>In all societies on some occasions, or even for extended periods, some interests will not be happy about all individuals being aware of their rights; they may see such education as an obstacle to their gaining political or economic power or even arbitrary rule. Consequently, they may attempt to limit citizens&#8217; access to information and institutions and try to guide them in directions which do not serve citizens&#8217; own true interests. (Gulen, 2006)</p>
<p>However, it is impossible to enjoy and practice democracy in a society where people are unaware of their rights and freedom, where people do not know how to seek and pursue their rights, where, in short, they do not have a developed democratic culture. In such societies occasional openings or temporary freedoms might be enjoyed, but it is always possible for special interests to come up with further impositions and undemocratic interventions. In many parts of the world we see tyrannical, authoritarian and dictatorial leaders who exploit or manipulate, for example, the electoral process, the legal system or the constitution not in the name of the progress or development of the country but for the continuance of their own power or in pursuit of self-interest or the interest of a select group around them. (Gulen, 2006)</p>
<p>To counteract the activities of vested interests, while individuals are being asked to fulfill their rights and duties in democratic system, in addition to knowledge they also need to have the self-confidence and the civic courage to own and defend their rights (Gulen, 2006). Here Gulen&#8217;s contribution to the development of democracy around the globe lies not only in his intellectual contribution to debate, but also in his ability to inspire action; this practical ability has led to the development of schools, universities, intercultural and interfaith dialogue groups and other institutions throughout the world.</p>
<h3><b>Conclusions</b></h3>
<p>Gulen&#8217;s approach is powerful proof of the democratic ideas propagated by Islam, as he is convinced that Islamic democracy and secular political liberalization are not two separate phenomena. He points out that the dominant Islamic culture in the Muslim world co-exists with democratic arrangements on the global level. So, the concept of modernization and democratization does not inevitably mean Westernization but can involve the possibility of adoption of many Western democratic achievements within the Islamic framework. Thus, political culture and democracy practiced among Muslims develop not by their isolation from or opposition to others but by giving of their own achievements and taking the best from others. Gulen proves that Islamic intellectual heritage and political culture must be revisited and respected and that Muslims&#8217; progress depends on the development of knowledge in Islamic sciences (‘ilm) and contemporary technical education (fen). Finally, Gulen life&#8217;s work has shown that there is no inherent conflict between Islamic thought and tradition and modern democracy. He has contributed positively to the understanding of democracy, civil society and human rights. (Cetin 2008: 219; Hunt, 2007:8-9; Barton, 2005: 43; Eickelman, 2002:4.)</p>
<p><em>Muhammed Cetin is the Publications Co-ordinator of the Institute of Interfaith Dialog (IID) and also writes weekly as a columnist in the international daily Today&#8217;s Zaman. He has a PhD in sociology.</em></p>
<h3><b>References</b></h3>
<ul>
<li>Barton, G. (2005) &#8220;Progressive Islamic thought, civil society and the Gulen movement in the national context: parallels with Indonesia.&#8221; Presented at the conference &#8220;Islam in the Contemporary World: The Fethullah Gulen Movement in Thought and Practice,&#8221; Rice University Conference, Houston, Texas, November 12-13, 2005, pp.51.</li>
<li>Çetin, M. (2008) &#8220;Reductionist Approaches to the Rise and Aims of the Gulen Movement,&#8221; at the conference &#8220;Islam in the Age of Global Challenges: Alternative Perspectives of the Gulen Movement,&#8221; November 14-15, 2008, Georgetown University, Washington, D.C., pp. 204-40.</li>
<li>Diamond, L. (2008) The Spirit of Democracy: The Struggle to Build Free Societies Throughout the World. Times Books.</li>
<li>Eickelman, D. F. (2002) &#8220;The Arab &#8220;Street&#8221; and the Middle East&#8217;s Democracy deficit.&#8221; Naval War College Review, LV(4), p.10. Available from: &lt;http:// nwc.navy.mil/press/Review/2002/autumn/pdfs/art3-a02.pdf&gt; [October 9, 2006].</li>
<li>Gulen, M. F. (2004) Toward a Global Civilization of Love and Tolerance. Somerset, New Jersey, The Light Inc.</li>
<li>Gulen, M. F. (2005) The Statue of Our Souls: Revival in Islamic Thought and Activism. Somerset, New Jersey, The Light Inc.</li>
<li>Gulen, M. F. (2006) &#8220;Demokrasi Yokusu&#8221;, 02.01.2006 [Herkül online] http://www.herkul.org/kiriktesti/index.php?view=article&amp;article_id=2846</li>
<li>Hunt, R. (2007) &#8220;Challenges in Understanding the Muslim Citizens of the Globalized World.&#8221; In: Hunt, R. A. &amp; Aslandogan, Y. A. eds. (2007), 1-10.</li>
<li>Hunt, R. A. &amp; Aslandogan, Y. A. eds. (2007) Muslim Citizens of the Globalized World: Contributions of the Gulen Movement. Somerset, New Jersey, IID Press &amp; The Light Inc.</li>
<li>Saritoprak, Z. &amp; Ünal, A. (2005) An interview with Fethullah Gulen. The Muslim World Special Issue, Islam in Contemporary Turkey: the Contributions of Gulen 95(3), 447-67.</li>
<li>Sykiainen, L. (2007) &#8220;Democracy and the Dialogue between Western and Islamic Legal Cultures: The Gulen Case.&#8221; In: Hunt, R. A. &amp; Aslandogan, Y. A. eds. (2007), 121-32.</li>
<li>Ünal, A. &amp; Williams, A. (2000) Fethullah Gulen: Advocate of Dialogue. Fairfax, VA, The Fountain.</li>
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		<title>A Serendipitous November</title>
		<link>https://fountainmagazine.com/all-issues/2009/issue-67-january-february-2009/a-serendipitous-november/</link>
		
		<dc:creator><![CDATA[The Fountain]]></dc:creator>
		<pubDate>Thu, 01 Jan 2009 00:00:00 +0000</pubDate>
				<category><![CDATA[Issue 67 (January - February 2009)]]></category>
		<category><![CDATA[american]]></category>
		<category><![CDATA[Editorial]]></category>
		<category><![CDATA[elections]]></category>
		<category><![CDATA[exclusive]]></category>
		<category><![CDATA[fountain]]></category>
		<category><![CDATA[global]]></category>
		<category><![CDATA[gulen]]></category>
		<category><![CDATA[hope]]></category>
		<category><![CDATA[influence]]></category>
		<category><![CDATA[issue]]></category>
		<category><![CDATA[issues]]></category>
		<category><![CDATA[movement]]></category>
		<category><![CDATA[november]]></category>
		<category><![CDATA[problems]]></category>
		<category><![CDATA[states]]></category>
		<category><![CDATA[women]]></category>
		<category><![CDATA[workshop]]></category>
		<category><![CDATA[world]]></category>
		<category><![CDATA[writers]]></category>
		<category><![CDATA[writing]]></category>
		<guid isPermaLink="false">http://107.21.79.195/all-issues/2009/issue-67-january-february-2009/a-serendipitous-november/</guid>

					<description><![CDATA[&#8220;Yes, we can,&#8221; responded a few hundred thousand people in Chicago to the encouraging and hope-inspiring address of the new president-elect of the United States following the announcement of the election results. The American elections of 2008 showed once again that the popular vote can have a real influence on the fate of a nation [&#8230;]]]></description>
										<content:encoded><![CDATA[<p>&#8220;Yes, we can,&#8221; responded a few hundred thousand people in Chicago to the encouraging and hope-inspiring address of the new president-elect of the United States following the announcement of the election results. The American elections of 2008 showed once again that the popular vote can have a real influence on the fate of a nation and the world when public demands are met by a successfully articulated promise for change. Hope is such a powerful energy that, when released, waves of its influence often overflow the borders of a country and echo in a larger area overseas. Dr. Muhammed Cetin explores in this issue this dynamic force of democracy together with its shortcomings, how it can be improved so as to cover all aspects of human existence, and contributions of Islamic scholarship.</p>
<p>The events of November 2008 will definitely remain in the memory not only because of the American elections, but also for the hopes that arose almost simultaneously from a successful international conference at Georgetown University-Islam in the Age of Global Challenges: Alternative Perspectives of the Gulen Movement. Participants from different parts of the world discussed for two full days how to deal with problems from poverty and education to gender issues, problems that are posing ever greater and more global threats to humanity. With schools and cultural centers over 110 countries as well as relief and charity organizations with a global outreach, the Gulen movement offers an interesting field of research for social scientists. I would like to draw readers’ attention to an essay in this issue by Farid al-Ansari of Morocco, who presents an insightful portrayal of this movement with which the author reveals he has deep resonance himself.</p>
<p>We are also proud to present in this issue an exclusive interview with Professor Ahmed Zewail. Conducted by Dr. Nuh Gedik, this wisdom-filled interview gives analytical insight into the decline of Muslims from the pinnacle of human civilization which they achieved and maintained for long centuries.</p>
<p>For The Fountain, this past November was also exceptional for something that happened for the first time: a women writers workshop. In order to encourage more female writers to activate their potential or blow the dust off their writing skills, a writing workshop exclusive to women was organized jointly by The Fountain and volunteers in Pittsburgh. Eighteen authors from different states participated. They brainstormed on various issues, ranging from how to be an effective writer to the aspects in which The Fountain is different from other periodicals. Former contributors shared their writing experience with beginners, while previous issues were comprehensively evaluated and analyzed. We are very grateful to the organizers, and we hope this volunteer spirit, without which The Fountain would not have become what it is, will continue to generate quality material for our readers across the globe.</p>
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