How much sleep is good for health?

Sabie S et al. Association of sleep duration at age 50, 60, and 70 years with risk of multimorbidity in the UK: 25-year follow-up of the Whitehall II cohort study. PLOS Medicine, October 2022.

Sleep is an essential function to help restore, rest and rejuvenate the body and mind. Yet, many people neglect a good night’s sleep. A recent study followed up 8000 people at the ages of 50, 60 and 70 over a 25-year period and found that short sleep duration is associated with a higher likelihood of being diagnosed with multiple chronic diseases, also called multimorbidity. Scientists examined the relationship between how long each participant slept daily, mortality, and whether they had been diagnosed with two or more chronic diseases such as heart disease, cancer, arthritis, dementia or diabetes. Participants who have five hours of sleep or less at age 50 were 20% more likely to have been diagnosed with a chronic disease and 40% more likely to be diagnosed with two or more chronic diseases compared to others who slept for up to seven hours. Moreover, sleeping for five hours or less at the age of 50, 60, and 70 was linked to a 30% to 40% increased risk of multimorbidity again when compared with those who slept for up to seven hours. Finally, sleeping for five hours or less at age 50 was associated with 25% increased risk of mortality suggesting that short sleep duration increases the risk of chronic diseases that can eventually lead to death. While sleep habits and structure change as people age, scientists recommend sleeping for 7 to 8 hours a night. Any sleep duration above or below these numbers have been associated with individual chronic diseases. This study adds to a growing body of research that highlights the importance of getting a good night’s sleep. In addition to how many hours you sleep, it is also important to make your room quiet and dark enough with a comfortable temperature. Keeping electronic devices away and avoiding heavy meals before you sleep also make a big difference for a healthy sleep.

Magnetic bacteria fight against cancer

Gwisai T et al. Magnetic torque–driven living microrobots for increased tumor infiltration. Science Robotics, October 2022.

One of the biggest challenges in the cancer therapeutics is to find efficient ways for anti-cancer drugs to reach the tumors they target. Researchers showed that they can now use bacteria to cross the blood vessel wall and infiltrate tumor tissue. In a recent study, researchers focused on the naturally magnetic bacteria Magnetospirillum, which can respond to magnetic fields and can be controlled by magnets. They first conjugated liposomes to the bacteria, tagged them with a fluorescent dye and demonstrated that the “cargo” was accumulated inside the cancerous tissue in cell culture. Then in animal models they showed that the magnetic bacteria were able to cross the vascular wall near the cancerous growth and migrate deep into the tumor’s interior when a rotating magnetic field applied at the tumor from outside the body. In principle, there are two major ways that bacteria can fight against cancer. First, they can carry anti-cancer drugs into the tumor. Second, they can damage and eliminate tumor cells in coordination with the immune system. It is now technically possible to modify bacteria using synthetic biology to optimize their therapeutic effect, reduce side effects and make them safer. This study opens up the possibility to use a magnetic field to control any clinically used therapeutic bacteria that have no natural magnetism as well. 

Secrets of Saturn’s rings

Wisdom J et al. Loss of a satellite could explain Saturn’s obliquity and young rings. Science, September 2022.

Scientists have long debated the origin and age of Saturn’s rings. Why are they much younger than the planet? Are they a permanent feature of Saturn? Or will they someday disappear? A new study provided fresh insights into the secrets of Saturn’s rings. The astronomers collected and analyzed data from 41 solar events, in which Saturn’s rings passed in front of the sun as seen from NASA’s Cassini spacecraft that orbited Saturn from 2004 to 2017. In combination with extensive computer simulations, they came up with the following model. Saturn, which currently has 83 moons, had at least one more moon, nicknamed in this study as Chrysalis. Chrysalis was tugging at the Saturn in a way that allowed it to have gravitational interaction with Neptune. About 160 million years ago, Chrysalis got too close to Saturn and created powerful tides that ripped the moon to shreds. Much of its debris fell into Saturn, and the rest spread out over the following hundred thousand years to form the iconic rings. Moreover, the loss of Chrysalis was enough to remove Saturn from Neptune’s gravitation and left it with its present-day unusually large 27 degree-tilt on its axis. The current model can explain several otherwise puzzling properties of Saturn at once and is consistent with the measured age and mass of the rings. It is noteworthy that these studies do not solely serve the purpose to feed into our curiosity about mysterious objects in space. Ring systems around giant planets provide invaluable test beds for investigating fundamental physical properties and processes in our solar system. Understanding the formation and evolution of ring systems could also help us to understand how planets, including Earth, form.

More Evidence that the Moon Came from the Earth

Will et al. Indigenous noble gases in the Moon’s interior. Science Advances, Aug 2022.

Humankind has always been fascinated with the Moon and studying it for nearly five centuries since Galileo. A recent discovery now adds new evidence to the currently favored “Giant Impact” theory which hypothesizes that the Moon was formed by a massive collision between Earth and another Mars-sized celestial body around 4.5 billion years ago. A group of researchers examined six samples of lunar meteorites collected in Antarctica using an exceptionally sensitive mass spectrometer and found that the meteorites contained noble gases like Neon and Helium, consistent with those found in the Earth’s mantle. Researchers proposed two possible scenarios for how the noble gases became trapped in the Moon’s interior. In the first scenario, impactors got mixed with the lunar mantle during cooling of the magma oceans to solidify over few million years of the Moon’s formation. In the second scenario, the Moon has been formed from a debris field surrounding the Earth where noble gases were directly mixed into the Moon’s interior mass. Discovery of noble gases on the moon may also inform us about its water content, too. If these gases are still there, then water could also been present in the Moon’s interior. Such water resources could be an invaluable resource for future human missions. More broadly, this study suggests that a wide variety of life-forming material can survive giant impacts early in a planet’s life. We now could make more reliable models of how planets and solar systems form and even how life is originated on the Earth.

Restoring cell functions after death?

Andrijevic et al. Cellular recovery after prolonged warm ischaemia of the whole body. Nature, August 2022.

Organ transplantation is an extremely complicated medical process. There is a massive shortage of donor organs. Waiting lists are long. Even if a patient is lucky to match with a donor organ, getting that organ before it dies through cell damage has been a big challenge. A new technology may offer a solution to extend the time that donor organs survive. A group of researchers has recently developed a technology called OrganEx, which can restore cellular activity even after death. Very shortly after the death of an organism, all cells start to die and organs begin to fail. The researchers worked with one hundred pigs to see whether cellular structures could be saved, or cell damage could be reversed, when OrganEx is applied after death. OrganEx has two major components. First is a device that simulates the heart and lung function by pushing a mix of blood and a drug cocktail to the organs. Second is the drug cocktail made of 13 chemical compounds. One hour after death, the pigs were hooked up to the OrganEx machine which pumped the cocktail to the animal’s organs for six hours. The results were striking; OrganEx could restore critical cell functions after death. While this is a huge step for organ preservation, researchers still have to make more tweaks for the technology to be used in humans. Once fully developed, OrganEx is expected to keep organs outside the body for long-term or transported longer distances.

Sweat-powered wearable electronic devices

Liu et al. Microbial biofilms for electricity generation from water evaporation and power to wearables. Nature Communications, July 2022.

Researchers have developed a biofilm that sticks to the skin like a Band-Aid to harness sweat for electricity that could power wearable devices. The biofilm is made using a type of bacteria called “geobacter sulfurreducens” known for its ability to produce electricity. In this biofilm design, bacteria convert energy from evaporation into electricity by using the moisture on a person’s skin. Most strikingly, researchers found that the biofilm bacteria do not need to be fed because they are dead! They do not need to be alive to produce electricity. The biofilm consists of thin sheets of bacteria colonies (thickness less than 0.1 millimeter) that is sandwiched between two mesh electrodes and sealed with a soft, sticky biopolymer to enable it to grip to the skin. Sticking this biofilm on your skin is like plugging in a battery. This technology has potential to revolutionize wearable electronics by solving the major problem of power supply. Moreover, this is a real green energy-driven device made naturally by the microbes and devoid of any unsustainably produced materials and toxic waste byproducts. The current version of the biofilm can produce enough energy to power small devices such as medical sensors or personal electronics, but the researchers hope to explore larger films that can power even more sophisticated devices.

Athlete’s foot is a frequent infection that millions of people suffer from annually. I once had it during my military service where we had to wear boots almost an entire day. Once during a noon intercession, I performed my ablutions to pray and I placed my feet under the sunlight to dry them. I was also hoping that ultraviolet rays from the sun would be good for the infection. Soon, flies swarmed in between my toes. When I could not bear the excessive itching, I tried to kill the flies until I was stopped by a friend who reminded me of the great sage Bediuzzaman’s comments where he called flies “cleaning workers.” At that time, I also remembered Prophet Muhammad’s (peace be upon him) words on flies. So, I patiently endured the nuisance, and repeated the same procedure for the next three or four days. Eventually, my feet were healed and there was no trace of the fungi.

In one of his very interesting hadiths, the Prophet, peace and blessings be upon him, is reported to have said the following about flies: “If a fly falls into your drink, dip it into your drink, then throw it away, for on one of its wings is a disease, and on the other is a cure. It dips the wing with the disease to protect itself” [1]. This hadith has been a reason for much controversy mainly due to germ disease theory.  According to Jonathan C. Brown, “even before modern medicine, the Hadith of the Fly was raising skeptical eyebrows and prompting Sunni defensiveness as early as the writings of Ibn Qutayba (d. 276/889)” [2]. Brown also mentions that this hadith “could be false or it could be true, since scientists used the flesh of a snake to help prepare antidotes to its poison” [3].

Before the microscope was invented it was impossible to define microbes or talk about the anatomy or microbiology of flies as we can today. However, the introduction of experimentation and observation as an important scientific method with the Renaissance served as a turning point in Western scientific revolution. Thus, the “proof-based medicine” conception that relies on experimentation and observation emerged as a precursor to today’s medicinal and scientific research. The importance of perceptions that rely on causes relating to the material world in persuading the human mind cannot be denied. It is harder to make people believe in something unless they are provided with concrete results that appeal to our five senses. We should not rush to deny any claim solely based upon our preconceptions and prior knowledge without doing any research about it; rather, we should pass our judgment on it after experimentation and observation.

Some people may automatically reject the idea that when a fly falls in our food or drink that we should immerse this microbe-carrying insect completely and they may say that this would not eliminate the microbes. Indeed, it may sound reasonable to assume that this disgusting insect that feeds on all sorts of dirt would cause only diseases. If you have an ample supply of food or water and if you do not have the stomach for it, you can of course refrain from eating or drinking such a food or drink. But, you can hardly advise someone who has very little water or food in a desert or at the time of famine to throw away what they have because of a fly.

We should examine different types of flies in laboratory settings using the method of experimentation and observation. First of all, it is very difficult to prove that someone can contract an illness from eating food in which a fly had fallen into although he or she had immersed that fly completely in that food. If it is proven that someone becomes ill due to a fly’s alighting in their food, then strong objections can be raised. If it is said that there many diseases caused by flies, no one will deny it. The point is not whether flies carry germs, but whether this advice for being protected from the germs carried by flies is correct or not. As a matter of fact, the advice by the Prophet seeks to protect us from diseases that may be caused by germs carried by flies. The great scholar Bediuzzaman’s words on flies also give us an alternative perspective to consider about these “tiny birds”:

“…Flies are dutiful about cleaning away noxious substances or germs that cause disease. By sucking up and absorbing harmful germs, they destroy them, and they cause noxious or poisonous substances to change into other harmless forms, thus preventing the spread of many contagious diseases. A sign that they are both laborers for health and cleansing operatives and chemists, serving many instances of wisdom, is the fact that they exist in extremely great numbers. For the things that are valuable and beneficial are multiplied.” [4]

The hadith of the Prophet and Bediuzzaman’s commentary encourage us to explore more about flies and whether they can be a source of healing in any way.

Flies are very ubiquitous on earth. There are approximately 125,000 species of flies, but only ten species live in our homes and are of concern to us. They feed on garbage and organic waste materials that act as a breeding ground for microbes such as bacteria, fungi, and viruses. The female fly lays down more than 100 eggs in the dung of some animals or in garbage. After one day, the larva emerges to feed on the surrounding organic materials. In two weeks, they become full-grown flies. In four generations, one female fly can lay 1.5 million eggs, but fortunately the majority die due to weather circumstances or become food for birds, reptiles, amphibians, and other insects. A fly can live for 60 days at most.

Given the ecological balance in nature, one comes to accept that there should be species that will remove all sorts of organic waste, garbage, dead animals or plants, and similar things by eating them. Houseflies feed on the rotting corpses of animals while female horseflies suck blood. How can flies, which act as health workers that are charged with the duty of cleaning the world, digest so many diverse amounts of garbage and waste?

Flies get their nourishment differently from other animals. What other animals do for digestion is done by flies outside their bodies. They do not have teeth-like structures in their mouths in order to chew solid, dry food and therefore have to turn such food into liquid form or split it into 0.45-mm or smaller pieces. In this liquid form, flies can easily suck up their food using their suitably shaped mouths. To do this, flies vomit a saliva-like liquid, containing enzymes and acids, and that disintegrates the solid food into something that can easily be digested in a couple of seconds. In this process, some of the microbes in that waste food can be disintegrated while the rest will be sent to the stomach.

These foods and microbes taken inside in the form of vomit are sent to a sac called a “crop” if they are not small enough to go through the digestive tract. Flies produce fresh saliva regularly during which the vomit moves between their mouths and crops. Eventually, the sufficiently liquefied food is sent to the stomach which contains enzymes and acidic content as well as partially disintegrated microorganisms.

What does scientific research tell us?

Based on the theory that flies must have remarkable antimicrobial defenses and resistance to survive the bacteria from rotting dung, meat, and fruit, a team at the department of biological sciences at Macquarie University in Australia set out to identify those antibacterial properties.

“Our research is a small part of a global research effort for new antibiotics, but we are looking where we believe no one has looked before,” said Joanne Clarke, who presented the group’s findings at the Australian Society for Microbiology Conference in Melbourne.

Clarke’s research showed that flies produce their own antibiotics, and this was tested on four different fly species. Such research may lead to better treatments for human infections from Escherichia coli and other virulent bacteria even, perhaps, Staphylococcus aureus (MRSA).

Upon preliminary results, a global pharmaceutical company decided to support the research over the next six months by trying to isolate antibiotic compounds from the material collected from the flies. The research team is trying to identify the specific antibacterial compounds. As antibiotics that will eventually be invented and chemically synthesized come from the body surface of flies, not from other fungi or bacteria, it is believed that any gene that gives resistance to microbes will not be easily transferred to pathogens and the new antibiotic form will have longer and more effective treatment duration [5].

Later, Russian doctors had developed interest in this topic and observed that flies contain many substances that can be more effective than traditional medications and certain fly larvae have very strong therapeutic effects [6].

Noting that flies should be kept away from hospitals, Professor Juan Alvarez Bravo at the University of Tokyo expressed his support for such research, saying, “But soon we will witness a rapid treatment for many diseases, which consists of extracts from flies” [7].

Some researchers at Auburn University of the United States discovered a protein in the fly’s saliva which can accelerate the lengthy process of healing wounds and chronic skin cracking. Entomologists Ed and Mary Cupp managed to isolate the protein which houseflies inject into their prey to increase blood flow in the skin of their prey. Mary Cupp and surgeon Steven Swaim demonstrated that surgical incisions, skin ulceration, and diabetic foot lesions treated with solutions that combine antibiotics and this protein heal faster and stronger than incisions treated with antibiotics alone [8, 9].

In another study, it was found that epithelial cells forming the inner layers of the front and back intestines of the fly protect it from the bacteria it swallows thanks to a special cuticular lining, and in this way, bacteria never directly touch the intestinal epithelium and cannot give any damage to it. In this study, it was noted that people nurtured a radical approach to flies and that fly control has been abused for the sake of human health, suggesting that flies may be the source of novel germicides that make use of their antimicrobial digestive enzymes, lysozyme, and antimicrobial peptides [10].

Viruses cause many diseases in cattle, sheep, and birds. These diseases include encephalitis, aphthous fever (foot and mouth diseases), and duck plague which can be transferred to people through infected animals. Some crops such as potatoes, tomatoes, bananas, and sugarcane can also be destroyed by viral infections.

Flies carry the viruses of many diseases which are consequently transferred to man’s food, drink, and body. Of these viral diseases are common flu, measles, mumps, chickenpox, warts, yellow fever, infectious liver diseases, some cases of paralysis, some types of cancer, and some chronic diseases of the central nervous system.

El-Naggar, Zaghloul, from Egypt, indicates that some of the disease-causing viruses may directly infect living beings and cause damage to their cells, while there is a type of virus which infects bacteria cells known as “bacteriophage.” These viruses, which can kill the bacteria they infect in a short time, are known as “virulent bacteriophage.” Those viruses that do not kill the bacteria they infect are called “temperate bacteriophage” [11].

After a bacteriophage infects a bacterium, more than 100 viruses are released from that bacterium and each of these viruses can infect new bacteria. The spreading of infection may continue until all vulnerable bacteria cells die. After it was discovered that bacteriophages are parasites of bacteria, they started to be used in treating the diseases caused by bacteria. However, their use in this manner declined after the discovery of antibiotics. Yet, the interest in phage treatment was revived after the emergence of bacterial resistance to antibiotics [12].

Researchers from Stanford University announced that they found a substance in flies that can improve the human immune system [13].

The work by Rehab Mohammed Atta from the Microbiology and Immunology Department, National Research Center, Cairo, Egypt, is quite remarkable [14]. In this research, the extracts taken separately from the left and right wings of flies were used against the bacteria and fungi calculated on nutrient “agar” media in the laboratory. It was demonstrated there was both bacterial and fungal growth for the left wing extract plates while no bacterial or fungal growth was reported for the right ones.

Given the fact that the garbage and rotting corpses on which flies feed from contain numerous dangerous bacteria, it is quite reasonable that it contains antibacterial materials necessary for its survival. In this case, the fly’s needs might be of service as sources of antibiotics that can prevent epidemics among human beings, and this may be the reason why they were created in the first place: not to be a source of nuisance but a source of healing for us.

Aj-Taili, et al., from the department of medical microbiology, Qassim University in Saudi Arabia, conducted an experiment using water, honey, and various fruit juices in different cups. They found no germ in the solution in which the whole body of fly was immersed while the solution in which only one wing of the fly was dipped indicated the presence of germs [15].

In sum, we can say that antibacterial materials produced in the bodies of flies protect them against the microbes in their environments and that these microbes can prevent epidemics among human beings. At the very least, this topic deserves in-depth research. Atta’s study confirms the virtue of the hadith that says, “The best way to release this vital antidote is to dip the fly in a liquid because these substances are concentrated on the outer surface of the fly body and wing.” Abduldaem al-Kaheel refers to this study in his website: “This is logical because the fly has a lot of harmful bacteria on the outside of her body and therefore in order to continue in her life, it should also carry anti-bacterial materials; these materials were furnished by God to protect it from viruses and diseases.” In the light of these studies, the need for conducting more research for obtaining antibiotics from the right wing of the fly is clear [16].

References

1. Abu Dawud, At’imah, 49. Also see Bukhari, Tib, 57, Bed’u al-Khalk 17; Ibn Majah, Tib, 31, Nasa’i, Far’, 11.
2. Brown, Jonathan A. C. 2009. Hadith: Muhammad’s Legacy in the Medieval and Modern World, p. 264.
3. Ibid. p. 255.
4. Nursi, Bediuzzaman Said. 2008. The Gleams. The Light, Inc. p. 376.
5. Danny Kingsley, ABC Science Online, 1 October 2002, The new buzz on antibiotics. Clarke, J., Gillings, M. and Beattie, A. (2002). Hypothesis-driven drug discovery. Microbiology Australia, pp. 8–10.
6. Petersburg State University, (2006). The fly effect: Russian Scientists Invent new medicine with the help of flies.
7. Bravo, J. A. (1994). The ointment in the fly: antibiotics. New antibiotic derived from a common fly. The Economist (US).
8. Ed and Mary Cupp (2005). Protein in Fly Saliva Speeds Healing of Incisions Wounds. Auburn University. R Am Ex Ars Medica, Inc., 7:23.
9. Protein in Fly Saliva Speeds Healing of Incisions, Wounds 20-Jan-2005. www.newswise.com/articles/protein-in-fly-saliva-speeds-healing-of-incisions-wounds
10. Nayduch, D. and Burrus, R.G. (2017). Flourishing in Filth: House Fly–Microbe Interactions Across Life History. Special Collection: Filth Fly–Microbe Interactions. Annals of the Entomological Society of America, 2017, Vol. 110, No. 1.
11. El-Naggar, Zaghloul, (2010). Housefly Falls into One’s Drink! 09 September 2010. www.quranandscience.com/quran-science/sunnah-science/204-housefly-falls-into-ones-drink-274
12. Aydogan, D.Y., Hadimli, H.H. (2016). Bakteriyofaj Tedavisi (Bacteriophage Treatment), Etlik Vet. Mikrobiyol. Derg.; 27 (1): 38–47.
13. Stanford University Medical Center, 2007. Fruit Fly Insight Could Lead to New Vaccines. Science Daily. www.sciencedaily.com/releases/2007/03/070308220904.htm
14. Atta, R. M. (2014): Microbiological Studies on Fly Wings (Musca domestica) Where Disease and Treat. World Journal of Medical Sciences 11 (4): 486–489.
15. Aj-Taili, S.I., A.A.R. Al-Misnid and K.D. Al-Uteybi, (2002). Wing One and the Other Disease Carrying the Cure. Qassim University. Danny Kingsley.
16. Abduldaem al-Kaheel, 1995. New facts: fly have a cure, www.kaheel7.com/eng.

Robots continue to advance and develop every year, and these consistent improvements continue to amaze us with how much they physically resemble humans. Even though these robots lack spiritual qualities and function way below the human brain, we still admire these developments, for they lead to even more discoveries and help us understand the miraculous human body even more.

Notwithstanding our medical knowledge that continues to build upon nearly 3,000 years of shared human experience and research, new discoveries about the human body, the magnificent work of God Almighty, continue to increase our admiration.

The discovery of the “Interstitium” and the “Subcapsular Proliferative Foci” in 2018 allow us to develop an even greater appreciation for the complexity of our bodies. They are called the “macro organ” and “micro organ” according to the amount of space that they occupy in our bodies, along with the nicknames “buffer organ” and “control center organ” according to their function. These newly discovered biological structures did not attract much attention earlier because, in accordance with our current understanding, organs are more easily visible structures such as the hands, arms, eyes, nose, kidneys, and lungs that have a certain shape and a set of clearly-defined functions. It is interesting that although these complex structures are so widespread in our bodies, they were not known until recently; they are now considered as organs [1].

The Macro Organ: Interstitium

According to an article published in Scientific Reports on March 27, 2018, the “interstitium” was discovered rather serendipitously by David Corr-Loce and Petros Benias of Mount Sinai Beth Medical Center along with Neil Theise, a pathologist from New York University. The discovery came when these physicians were analyzing a cancer patient’s bile duct. Although they had been conducting the same routine over the years, it was the first time they had the sight of slots between examined tissues. They realized that the interstitium was unnoticed earlier due to the disappearance of interstitial fluid after they had examined the tissue with their usual histological methods. Subsequently, the researchers found that this structure was found not only in the bile duct but also in many other organs.

Specifically located under our skin, these micro-compartments were also found in almost all organ membranes except the intestines, lungs, veins, and muscles in order to form a network around the organs with malleable but sturdy proteins. The interstitium, the entirety of the intercellular spaces filled with liquid, has been defined as the largest organ in the body. Actually, examining cells and tissues has been the subject of histology and cytology science for the last 150 years, and the fluid that fills the tissues and forms a basis for supporting these cells was not new to the medical world. However, its definition as a new organ was a first.

The researchers froze the biopsy tissues obtained from the bile ducts of 12 patients in order to preserve and examine the anatomy of the discovered structure. One of the reasons that this organ exists is because it protects the surrounding organs by acting as a shock-absorber and has an effect similar to that of a car’s bumper. Damage to tissues and internal organs remains minimal when one falls, hits something or is impacted Using a micro-endoscopic camera, the volume of this whole organ was revealed to be about ten liters in an adult human [2].

It was later discovered that the interstitium is also present in the structure of lymph nodes, the most important part of the body’s immune system, and that cancer cells enter the lymphatic system through the interstitium. In this case, the interstitium play a significant role as a passageway, or conduction interface, for spreading cancer cells across the body. In an analogy, this organ is akin to the water in which fish swim, the air that surrounds us, and the soil that borders the roots of trees. In this liquid that rotates the cells and spans on the base where they are positioned, any exchange of substances of body biochemistry is regulated within the required amount and size to provide a good setting to the cells, and the hard mechanical effects that may impact the cells are alleviated and absorbed by this liquid pad.

Each discovery of the interstitium’s features, including its significant contributions in the fight against cancer, reveals more and more about how this great organ aids in intercellular communication.

The Micro Organ: Subcapsular Proliferative Foci

One of the most important features of the immune system is that it has its own “memory.” The cells of the immune system can remember the infections a person has contracted before, and can fight infections before they spread. How quickly the immune system reacts based on memory may vary, for instance depending on the type of infection, but is usually quite rapid. Considering how many bacteria multiply in a matter of seconds, a quick response must be launched to prevent infections from spreading across the body.

Professor Tri Phan of the Garvan Medical Research Institute led the team of researchers that discovered the subcapsular proliferative foci (SPF), a “micro-organ” that appeared in the lymph nodes during an infection. Lymph nodes and lymphoid organs such as tonsils, thymus, and spleen are surrounded by a protective capsule made of connective tissue. This capsule was considered to serve the purpose of a mechanical support only to enclose and protect the lymph nodes. However, recent research has shown that in some areas under this capsule, cells that had been alerted to previous encounters with harmful invasive organisms are gathered. These main subcapsular cells are memory B cells that carry information on how to counter the invasive organisms. Memory B cells also proliferate into plasma cells, which are highly important for producing antibodies. Therefore, when an infection reoccurs in our body the subcapsular proliferative foci act quickly to form the first defensive front to prevent the possible spread of infection.

The purpose of vaccines is to activate the attenuated form of a harmful organism to be stored in the body’s memory as an immune response. If the body comes back into contact with similar bacteria in the future, the immune system will remember how to fight it. The discovery of the sub-capsule foci also revealed that these centers are the home for the memory B cells. If they can unveil the development and training processes of the memory B cells in these slots, scientists can produce vaccines that enhance the memory of the immune system even more quickly and efficiently.

The reason why these structures have not been noticed earlier is due to their emaciation, brief emergence, and disappearance. The sub-capsule proliferation centers presented in the article “Memory B Cells Are Reactivated in Subcapsular Proliferative Foci of Lymph Nodes” published in Nature Communications on August 22, 2018 are defined by some authoritative scientists as the “micro-organ.” According to the findings about this new organ, if our infection-fighting immune system would have activated longer than it currently does, we would easily die. Every minute is very crucial in this struggle. These excellent centers that produce memory cells under the lymph node [3] capsules fight bacteria which can replicate in multitudes every 20–30 minutes during an infection.

Although the world of science has been working with the microscope for about 400 years, these centers that have been embedded in our body since its creation could only be noticed today when the microscope design has reached its technological peak.

There are trillions of bacteria living in the intestinal cavity, skin, and orifices of our body. Some of these are already protective and beneficial, yet others are pathogenic. But they do not make us sick because of B cell production centers. When our immune system is weakened for any reason (such as stress, insomnia, or malnutrition) these bacteria can cause illnesses and meet little resistance. These sub-capsular micro-organisms surrounding the lymph nodes were placed in the most strategic places across the human body to fight infections in the fastest way, while the lymph nodes were placed at locations that are most vulnerable to microbial attack.

Consequently, these discoveries increase our admiration for the palace and magnificent realm called our body. It is likely in the light of this information that the anatomy and histology books may be rewritten and the definitions of organs and tissues may be redefined.

References

• Claire Maldarelli, “Scientists found a new organ, but it might not be what you’re expecting,” Popular Science, 3 April 2018.
• iflscience.com/health-and-medicine/newly-discovered-microorgan-helps-explain-how-vaccine.
• nature.com/articles/s41598-018-23062-6

His exalted name, “Light,” touches the darkness
and everywhere is filled with light.
The letters written from a brilliant world
are revealed to the hearts;
Then the Divine command,
“Read in the name of your Lord!”
descends and becomes our intentions.

We look around the Earth and believe that we start to sail into the dark upon reaching the depths of the skies, the land, and the oceans. But if we look with care, we may notice that the inhabitants of those places often inform us of the beauties they are created with.

The depths of the oceans, especially, are where what we see leave us amazed. From microscopic bacteria to giant squids, and from tiny lighted jellyfish to spiny skin, many creatures, from ascidians to some sharks and stingrays, turn on their lights, literally, illuminating the darkness of the deep sea. This biological light-producing process in the body of some animals is called bioluminescence. It is astounding that these creatures can emit biological light with no change in their body temperature. Normally, light is formed by emitting heat. This basic principle applies to some of the most common sources of light that we know of, such as campfires and electrical lightbulbs.

A mechanism that produces light without heat has been created in some insects living under the sea as well as those on land. The basis of biological light production is generally the oxidation of luciferin, i.e. its conversion to oxyluciferin. The enzyme necessary for this chemical reaction to occur is luciferase.

Most living creatures that can produce bioluminescence live in deep, dark areas of the world’s various seas and oceans. Some of the inhabitants of these depths emit strong blue (secondarily green) light at an average wavelength of 475 nm. An interesting note is that underwater life forms are often created with sensitivity to the wavelengths of blue-green lights mentioned above. In rare cases, there are also sea creatures that emit light in the yellow-red wavelength range.

Animals with the ability to emit light are also usually given excellent control mechanisms so that they can use their equipment as a weapon. They can turn their lights on and off in a flash and can utilize complex chemical and neurological mechanisms that provide functions such as adjusting the intensity, color, and direction of the light. Creatures that produce light underwater sometimes do not need to use the light in order to see where they are going. Instead, they tend to use these marvelous gifts in a variety of strategic ways. Some will try to attract the attention of their prey; others will attempt to ward off predators and aggressors; still others will use their lights to indicate that they are ready for reproduction. It is even possible for some creatures to utilize several of these functions at the same time.

Let us now examine some specific species and how they employ bioluminescence.

Light vomiting shrimp

One of the most interesting examples of bioluminescence in animals is the light-emitting deep-sea shrimp Acanthephyra purpurea. This shrimp will actually vomit light from its mouth as a last-ditch effort to deter predators. The intent is to disorient, confuse, and even temporarily blind other creatures, similar to the effect of a flashbang grenade, so that the shrimp can retreat into the dark. As a result of their research on the shrimps, marine biologist Edith Widder states that the chemical substances sprayed are not blue when they are in the body and that the blue light production occurs when the luciferin substance in the sprayed liquid comes into contact with the oxygen in water.

Loosejaw fish

There are at least 42 recorded families of bony fish that have bioluminescent properties. One of them is the Photostomias guernei, or the “loosejaw fish”. This fish has a remarkable organ that emits light on the sides of its eyes. These lights, which resemble the headlight lamps of our cars, are not constantly lit, in order to avoid waste. When hunting, the fish illuminates the way ahead with the light it produces, and it can turn these lights off when they are no longer needed. A wonderful feature of this organ is that, just like headlights, a highly reflective layer is created behind the main center of the light. The reason that the fish is able to turn the light off may be because its black velvety body is contrasted by the light color of the organ and would thus attract much unwanted attention.

Deep sea hatchetfish

Bioluminescent systems were also given to creatures in order to act as a means of camouflage. They work phenomenally for both hunting and survival in situations where blending in with the environment is paramount for catching prey or evading predators. In the depths of the underwater world, the silhouette of an animal bathing in light is an easily recognizable target. One of the best examples of this phenomenon is the deep-sea hatchetfish. The fish has been created with its eyes on top of its body and its mouth facing upwards, making it easier to hunt. It also emits bioluminescence from its abdomen to provide camouflage against more aggressive, larger fish that swim lower than itself. The color of the light emitted makes it difficult to recognize the fish from below as it perfectly matches the color intensity of the environment. In the meantime, if the sunlight that hits the sea is interrupted in any way, the fish will turn off its lights and the camouflage will continue.

Black dragonfish

Diversity in the light organs of the scaleless black dragonfish (Melanostomias bartonbeani)

This species of black dragonfish (Melanostomias bartonbeani) takes advantage of luminescence in a number of ways. An illuminated area next to the eyes is used to find prey and send signals to its mates. The black dragonfish’s chin also has an illuminated extension that dangles in the waves as bait for naive prey. In addition, a set of small organs of light arranged along its abdomen play a role in concealing its silhouette. Furthermore, light-emitting pocket-like structures surrounded by a gelatinous capsule embedded in the skin are used as alarm systems. The bioluminescent systems within this creature are immensely complex and beautiful, and when observed in detail reveal the dazzling splendor of the world that we live in.

Fish with 3 different types of illumination

The Northern Stoplight Loosejaw (Malacosteus niger) has three different types of light organs, the complex use of which cannot be possible without top engineering skills. The wide, drop-shaped, illuminated organ under its eyes emits a red light at a wavelength of 702 nm as if it knows the laws of optics under the sea. This red light is not visible to most deep-sea creatures, for it is quickly absorbed in water. Yet, with this red light this fish is able to have vision in a close proximity while remaining largely undetected. This is similar to infrared binoculars soldiers use for night vision without giving away their position. The loosejaw is thus a dangerous hunter that has an edge over its prey. There also exists a blue light-emitting oval section, behind the organ, that emits red light and is usually larger in males. A third light organ is round and smaller and is located between the eyes and the red-light organ.

Angler fish

The angler fish is one of the most iconic fish of the deep ocean due to its famous rod and bioluminescence. The angler fish does not actually produce its light on its own: the light is credited to bioluminescent symbiotic bacteria that inhabit the end of the rod on their forehead. This illuminated part, which resembles a worm-like bait, is very attractive to small fish. These fish are thus lured to the angler expecting a quick snack, but instead the angler swallows them whole with its massive mouth. While doing their task of helping the angler hunt small fish, the bacteria maintain a symbiotic relationship with the fish and also find an environment in which to proliferate. In this way, they form a good example of cooperation and solidarity. One may wonder: how can such a mutual agreement come into fruition between a fish and some bacteria which are deprived of a nervous system, mind, and consciousness?

One of the reasons that marine biologists are interested in light-emitting bacteria is the wide-lit regions called the “Milky Seas.” These can be observed in satellite images of Earth. Recently, satellites helped detect a bioluminescent area of roughly 5,946 sq. mi in the Indian Ocean; scientists wondered if some bioluminescent bacteria or Dinoflagellate-type flame-colored algae may be the cause of the phenomenon.

Alarming jellyfish

The luminescence of some marine life serves as an alarm or distress siren. A remarkable example of this is the Atolla jellyfish (Atolla wyvillei), an elegant inhabitant of deep waters. This jellyfish produces blue lights that are spread in circles in the water when it is attacked. Thanks to these lights, it tries to draw the attention of larger and stronger animals than the initial attacker in order to escape from harm’s way.

As can be observed in some species that we are familiar with, such as fireflies, the bioluminescence feature that is full of wisdom granted to some living beings is a thought-provoking biological miracle which does not only make us ponder where they got these abilities from but also reveals how so many intricate patterns are found in nature.

References

• Steven H.D. Haddock, Mark A. Moline and James F. Case. 2010. Bioluminescence in the Sea, Article in Annual Review of Marine Science, DOI:10.1146/annurev-marine-120308-081028 Source: PubMed.
• Edith A. Widder. 2001. Harbor Branch Oceanographic Institution, Fort Pierce, Florida, Marine Bioluminescence, Bioscience Explained, vol 1, no 1, pp. 1-9.
• Edith A. Widder. 2010. “Bioluminescence in the Ocean: Origins of Biological, Chemical, and Ecological Diversity,” Science, vol. 328, pp. 704-708.
• www.wired.com/2012/01/glow-little-spewing-shrimp-glow/ March 28, 2018.
• en.wikipedia.org/wiki/Malacosteus_niger / April 1, 2018.
• Harold, A. 2015. Malacosteus niger. The IUCN Red List of Threatened Species 2015: e.T190149A21909439. http://dx.doi.org/10.2305/IUCN.UK.2015-4.RLTS.T190149A21909439.en.
• https://www.iucnredlist.org/species/190149/21909439

We all may appreciate the difference between the positive impact made by a smile of pearly-white teeth and the repulsion triggered by yellowed and blackened rotten teeth, but the health issues run much deeper: as our medical knowledge grows, we are discovering that many diseases originate from dental cavities where microbes teem and nest, causing inflammations in many organs and tissues, most notably in the heart, kidneys, and joints.

The use of herbal sticks for cleaning teeth dates back to around 3500 BC, the time of the Babylonians. In several works of Ancient Greek and Roman literature, chewable sticks to aid dental and mouth hygiene are mentioned [1]. Hippocrates (355 BC) advises rubbing a ball of cotton wrapped around a stick and dipped in honey on teeth, to maintain dental hygiene, whereas Romans used pastes obtained from gumwood [2]. Dental hygiene is coming throughout history.

Arabs utilized the miswak for many years [3]. The Japanese used wooden sticks called “koyoji” and Jews used wooden sticks called “kesam.” In the 1920s, in some rural areas across the United States, a stick of blood-twig was used for rubbing on the teeth [3]. And according to a Chinese encyclopedia published in the seventeenth century, the first-ever toothbrush was made in China, in 1498.

Prophet Muhammad, peace be upon him, warned those of his Companions who visited him with bad teeth about the need for dental hygiene (Ahmad ibn Hanbal, Musnad 1/214):

“I oft reiterated my recommendations to you about the miswak.” (Bukhari, Jum’a 8; Nasai, Taharah 5; Ahmad ibn Hanbal, Musnad 3/143; Darimi, Wudhu’ 18)

“(The Archangel) Gabriel counseled me to use the miswak so much that I thought a verse might be revealed about the miswak to decree its use as obligatory for all.” (Ibn Majah)

Obviously he assigned the utmost importance to dental hygiene. It should be noted here that the Araq tree (Salvadora persica) from which the miswaq is obtained has features that are not present in other trees, and the Prophet particularly specified using the roots of that tree as the miswak.

Research has been conducted to discover the scientific and modern medicinal effects of the miswak, which has been used by Muslims in adherence to the Prophet’s practice. In 2010, a Ph.D. study at Karolinka Institute, Sweden, provided a significant message about its effectiveness [4] (Picture 1).

The Araq tree, which is used as the miswak across a geography spanning from Africa to the far east, is a short tree or bush with a slanted trunk, and it is easy to chew its spongy roots, parts of which generally expand and soften when dipped in water (Picture 2).

The roots of the Araq tree are washed to remove the soil, and approximately 1 cm from the tip of the root stick is peeled to be used as the toothbrush. The stick is pummeled or chewed until the fibers become softer (Picture 3). Fresh and soft miswak are preferable: If the miswak is dry, it is advised to dip it in freshwater for 24 hours before use. It is better to peel frequently, so the tip is renewed. The most practical advice is to use the peeled tip until it loses its tang and fragrance, because the fragrant components indicate the beneficial effect of the miswak. According to a study, using the same tip for more than 24 hours lowers its cytotoxic ability to get rid of microbes.

The practice of using miswak in the Muslim World is widespread in Asia, Africa, and some regions in the Middle East. As many Muslims opt for miswak use to maintain a practice of the Prophet, the World Health Organization (WHO) also advises and encourages the use of miswak as an effective dental hygiene tool along with the conventional toothbrush. The miswak is easy to use and effective; it also has chemical properties that help control dental plaque. Based on the basic information we have about the miswak, we can easily say that deeper research is needed for its different components, like its fibers, essence, and essential oils.

Antibacterial effects of the miswak

The antibacterial activities of the essences obtained by crushing different roots of the miswak have been analyzed by microbiological techniques. It was discovered that the miswak essence has a very strong antibacterial effect, predominantly against Gram-negative bacteria, including mouth-cavity microbes like Porphyromonas gingivalis and Aggregatibacter actinomycetemcomitans. Two additional studies conducted on five different types of bacteria i.e. Streptococcus mutans, S. faecalis, S. aureus, Haemophilus influenzae, Salmonella enterica, and Candida albicans, and a type of fungus [5, 6, 7, 8] revealed that the miswak essence stops the reproduction of micro-organisms, has a lower effect on Lactobacillus acidophilus, is active against Herpes simplex virus which causes blistered lesions, and suppresses acid production.

The essential oil obtained from miswak essence includes 70% benzyl isothiocyanate, 9.4% limonene, 8.7% I-pinene and 2.55% flavonoid. As the miswak’s main antibacterial component, benzyl isothiocyanate kills bacteria by forming protrusions on their cell membranes. The volatile nature of this substance may open doors to new practices requiring antibacterial treatment. It has been proven that fresh miswak is effective at preventing the formation of dental plaque and gum inflammation, and it has also been acknowledged that it may play a potential role in preventing periodontal diseases.

The miswak essence hinders acidic (pH) conditions causing tartar and dental plaque, leads to a long-term increase of pH in the mouth, stimulates saliva flow in the parotid glands (located in front of both ears), and prevents tartar formation.

It is necessary to conduct further lab and clinical research to augment the positive results shown so far about the effects of the miswak against the inflammation of the palate and gums, as well as its antiviral and antifungal activities. Some research has additionally suggested that the miswak has antioxidant, analgesic, and anti-inflammatory effects. It is claimed that potassium chloride, salvadourea (a urea derivative), alkaloids, and oleic and linoleic acids in the miswak sap increase the viscosity of saliva, helps it to soak into hard-to-reach corners in the mouth, and contributes to overall dental hygiene. It is reported that a substance named Xylitol in the miswak essence suppresses acid production and the reproduction of mutant streptococci [9, 10].

An interesting substance in the miswak oil

Benzyl-isothiocyanates are effective molecules in the defense systems of several plants such as cabbage, watercress, and broccoli. Secreted after damage to plant tissues, benzyl isothiocyanate forms a protective antibacterial layer on the damaged part of the plant. While dental plaque and tartar are mechanically removed by rubbing the miswak on teeth, this action also helps the substance secreted from the miswak reach deeper parts of the oral cavity. It is especially proven that benzyl isothiocyanates are strongly effective as bactericide on Gram-negative bacteria and have minimal effect on Gram-positives.

Lab tests conducted on animals indicate that these components also have anti-carcinogenic activity, and people who get isothiocyanates by nutrition have a lower risk of cancer. It is fascinating that the miswak, too, has the same substance.

While introducing a new set of ethical principles, Prophet Muhammad, peace be upon him, revoked some customs and habits inherent to the pagan culture before Islam (Age of Ignorance) and kept others. Using miswak was a practice among the Arabs in the region; the Prophet encouraged its use and emphasized its benefits. Eventually, Muslims have adopted it as not only a habitual practice, but also as a healthy spiritual activity and are keeping the memory of the Prophet alive.

References

1. Wu, C.D., Darout, I.A. and Skaug, N. (2001): Chewing sticks: timeless natural toothbrushes for oral cleansing. Journal of Periodontal Research 36, 275-84.
2. Hyson, J.M., Jr. (2003): History of the toothbrush. Journal of the History of Dentistry 51, 73-80.
3. Bos, G. (1993): The Miswak, an aspect of dental care in Islam. Medical History, 37, 68-79.
4. Sofrata, A. H. (2010): Salvadora persica (Miswak). An effective way of killing oral pathogens. Thesis for doctoral degree (Ph.D.). From the Division of Periodontology, Department of Dental Medicine, Karolinska Institutet, Stockholm, Sweden.
5. Al-Lafi, T. and Ababneh, H. (1995): The effect of the extract of the Miswak (chewing sticks) used in Jordan and the Middle East on oral bacteria. International Dental Journal, 45, 218-222.
6. Almas, K., Al-Bagieh, N. And Akpata, E. (1997): In vitro antimicrobial effect of extracts of freshly cut and 1-month-old miswak (chewing sticks). Biomedical Letters, 56, 145-149.
7. Almas, K. (1999): The antimicrobial effects of extracts of Azadirachta indica (Neem) and Salvadore persica (Arak) chewing sticks. Indian Journal of Dental Research, 10, 23-26.
8. Almas, K. (2001): The antimicrobial effects of seven different types of Asian chewing sticks. Odontostomatolgie Tropicale, 24, 17-20.
9. Kakuta, H., Iwami, Y., Mayanagi, H. and Takahashi, N. (2003): Xylitol inhibition of acid production and growth of mutans Streptococci in the presence of various dietary sugars under strictly anaerobic conditions. Caries Research, 37, 404-409.
10. Miyasawa, H., Iwami, Y., Mayanagi, H. and Takahashi, N. (2003): Xylitol inhibition of anaerobic acid production by Streptococcus mutans at various pH levels. Oral Microbiology and Immunology, 18, 215-219.

We eat, sleep, and go to the bathroom. Yet, we never think about how all these physical needs are processed in the systems of our body when they are functioning normally.

Yes, our bodies are created with perfect systems by which our all kinds of needs are met. The digestive system is one of them. Our intestines are key elements of this system, so much so that asking someone “How are your intestines?” would be as comprehensive as asking “How are you?”

Digestive system

Food is critical to life. A human being can bear hunger for one month at most and can only endure a few days of drought. Thus, eating and drinking is crucial.

Foods as we eat them are not convenient for use by the cells. Food must be broken down into smaller pieces. This process begins in the mouth and ends at the anus, and it is called digestion.

The main task of our stomach and intestines is digestion. The teeth, salivary glands, the tongue, and the gullet – as well as swallowing – are essential secondary elements. Additionally, if the pancreas or liver fall ill, it can paralyze the whole system. While also working with the circulatory system, kidneys have the task of reabsorbing useful substances like glucose, amino acids, and water.

Our digestive system works together with the urinary system and the digestive organs like a factory. How these parts work together is still not fully understood, but more detailed research has been performed and revealed more secrets of the digestive system. By means of every discovery, it is realized that this perfect creation has a more intricate structure than is known.

The brain in the intestine

There are more neurons in our intestines than in our spinal cord and the intestines are created in a way that can move independently from the central nervous system. They have their own nervous system, known as enteric nervous system (ENS), which is also called the “second brain. “Within those yards of tubing lies a complex web of microcircuitry driven by more neurotransmitters and neuromodulators than can be found anywhere else in the peripheral nervous system. These allow the ENS to perform many of its tasks in the absence of central nervous system (CNS) control…” [1]. Thus, “… isolated segments of intestine can independently coordinate propulsive movements and propel content without any neural connections to the brain or spinal cord [2].

The intestines take action when food comes into the stomach. This movement is known as colonic migrating motor complexes (CMMC), and it moves the substances that cannot be digested, like bone and fiber. According to neurophysiologist Nick Spencer et al, “The gut wall contains a complete network of intrinsic nerves capable of propelling contents along the bowel, without any requirement of nerves originating in the brain or spinal cord” [3].

Eat different types of food

70% of our immune system cells are in our intestines. A big part of the approximately 38 trillion bacteria in our body are in our intestines, and they are useful; they have a big role in digesting food. Different groups of bacteria feed on different types of food; so for intestinal flora it is very important to have a variety of food on our table. For the ideal day on a plate Dr. Megan Rossi recommends people should “aim for at least 30 different plant species per week.” “The reason for this is that each plant contains different types of fibres and phytochemicals (the super healthy components of plants) that feed different good bacteria. The more plant variety, the more variety of gut bacteria – which is associated with health and happiness” [4].

Pets in our body

For Dr. Megan Rossi, “microbes are like our pets, so you have to take care of them and feed them” [5].

Of course, germ flora in our body is not just limited to the ones in the intestines. Bacteria, viruses, and fungi in our body are nearly scattered throughout the whole body. These living things produce pellicle on our head skin, irritate the gaps between our toes, live on our skin, are on duty among our teeth, and have ecosystems and assigned positions convenient to them. According to the situation, they keep their living spaces healthy or unhealthy. Although they number 50 trillion, they are approximately 200 grams of our body weight.  

Useful microbes

An average size human adult houses about 10¹² bacteria on the skin, 10¹⁰ in the mouth, and 10¹⁴ in the gastrointestinal tract [6].

These microorganisms are useful microbes with duties in our body. The harmless flora of microbes is generally present on the skin, mouth, teeth, nose, throat, and bowel and genital areas. There isn’t normal flora in internal organs except the large bowel. Internal organs have no microbes. If we look closely, flora is inserted in every part of our body which is dirty and has contact with the outer environment. If it was not for the useful flora, microorganisms causing illness would settle instead. Only intestinal bacteria are permanent microbes which are useful. For example, vitamin K plays a part in a crucial event like blood clotting and is produced in the intestine.

Control your stress

Research has revealed that mental and psychological stress affects the health of the intestines. Serotonin is produced automatically in case of need, and 85% of it is produced in the digestive tract. Stress suppresses the level of serotonin produced. Psychological illnesses are associated with low levels of serotonin.

Studies have shown that relaxing practices like meditation for 15-20 minutes can be good for health and reduce stress. At this point, daily prayers are a kind of therapy. Other ways to stay healthy include: avoiding things like alcohol and caffeine, and sleeping well.

Our body has ways of telling us when it’s not healthy. For instance, we can learn the digestive tract isn’t healthy if we have to use the toilet more than three times a day and fewer than three times a week.

References

1. Gershon, Michael D. “The Enteric Nervous System: A Second Brain.” Pdfs.semanticscholar.org.
2. Spencer et al. 2018. “Identification of a Rhythmic Firing Pattern in the Enteric Nervous System That Generates Rhythmic Electrical Activity in Smooth Muscle.” http://www.jneurosci.org/content/38/24/5507
3. http://www.flinders.edu.au/neuroscience/lab_visceral.html
4. https://www.dailymail.co.uk/femail/article-5543159/Doctor-debunks-myths-surrounding-gut-health-say-surprise-you.html
5. https://navva.org/brazil/health/why-the-bowel-is-considered-our-39-2nd-brain-39-and-other-5-amazing-facts-about-the-organ-news/
6. http://www.textbookofbacteriology.net/normalflora_3.html

Olkowicz S. et al. Birds have primate-like numbers of neurons in the forebrain. Proceedings of the National Academy of Sciences of the United States. June, 2016.

Calling someone a “bird brain” is no longer an accurate insult to their intelligence. Although birds generally have small brains, a recent study showed that certain types of birds, such as parrots, songbirds, and ravens, have a surprisingly high number of neurons, the brain cells responsible for processing power, in their small brains. Researchers dissected 73 brains from 28 bird species, then dissolved them completely in a detergent solution. Once they obtained a homogenous solution of brain cells, they labeled and counted them to calculate the exact number of neurons in each part of the brain. They particularly focused on the forebrain region called the pallium, a structure of the bird brain that is analogous to the mammalian cerebral cortex. Their analyses revealed that neuronal sizes in bird brains were much smaller than expected, they displayed shorter but more compact connections between neurons, and in some birds, the pallium contained twice as many neurons, compared to primate brains of similar sizes. Scientists have always been puzzled that birds can be very smart yet have very small brains. For example, ravens are very intelligent, capable of using tools, planning ahead, and solving complex problems. While a direct link between number of neurons and cognitive ability has not been established, this study provides an explanation for the remarkably high cognitive power of some birds.

Bacteria as vaccine vessels

Li Y. et al. In situ pneumococcal vaccine production and delivery through a hybrid biological-biomaterial vector. Science Advances. July, 2016

The thought of ingesting Escherichia coli (E. coli) bacteria is probably not appealing to most of us, but what if it can be used to treat diseases?  E.coli is a rod-shaped bacterium that normally lives in the intestines of people and animals. Most E. coli strains are harmless, and are actually important for a healthy human intestinal tract. Researchers developed an E.-coli-based transport capsule to increase the effectiveness and efficiency of the next generation of vaccines. The capsule is  generated by wrapping the positively charged synthetic polymer beta amino ester around the negatively charged bacteria. Then, researches inserted a known protein-based vaccine against pneumococcal disease into the capsule and tested the effects in mice. Analyses of vaccinated mice showed that the capsule caused an enhanced immune response by activating both the passive and active targeting of immune cells. Moreover, those mice who had been administered the capsule exhibited strong vaccination capabilities against pneumococcal disease. The E-coli-based capsule is relatively cheap and flexible, and can be used in a variety of therapies in the future, including fighting cancer and other infectious diseases.

Paper-based microbial fuel generates power without current consumption

Hashemi N. et al. A paper-based microbial fuel cell operating under continuous flow condition. Technology. June, 2016.

Researchers demonstrated a three-dimensional paper-based microbial fuel cell (MFC) that exploits capillary action to channelize the liquids through the MFC system without using an external power.  The system was able to run for five days and generate current, as biofilm forms on the anode. The mini eco-friendly MFC generates 1.3 μW of power and 52.25 μA with a power density of approximately 25 W/m3. These results show that the paper-based microbial fuel cells could be the next alternative power source, by transforming chemical energy into electrical energy without the use of any outside power. The key element of the project is the size and thickness of the biofilm. Bacterial cells metabolize electron-rich substances in a complex process involving many enzyme-catalyzed reactions and ultimately generate free mobile electrons. Then electrons are free to travel to the anode through one of many modes of electron transport. This device, for the first time, demonstrates that microbial fuel cells can be used for longer durations and operate individually. The research team is currently exploring new improvements in the system to better control the voltage output and to create a constant current. Although the current MFC model is not ready for commercialization yet, it opens new avenues in applications for biosensors and power generation.

The International Agency for Research on Cancer (IARC), the cancer agency of the World Health Organization, has investigated nearly 1,000 things that increase the risk of cancer. Based on a report from 22 experts from 10 countries, IARC recently announced that the consumption of red meat is probably carcinogenic to humans; processed meat products including sausages, hot dogs, and salamis are among the highest-risk carcinogens for humans. Researchers found that daily consumption of 50 grams of processed meat has been found to increase the risk of colorectal cancer by 18%. Carcinogens in processed meat are thought to come from chemicals generated during the processing of the meat by smoking or curing. Scientific evidence from 800 studies show a strong association between processed meat and cancer, particularly colorectal cancer, but also pancreatic and prostate cancer. Although the risk of developing cancer from red meat is relatively low, high consumption significantly escalates the cancer risk. These findings further support the public health recommendation to lower the intake of red and processed meats. It is noteworthy that the cancer risk from smoking is still multiple orders greater; as smoking causes about 1,000,000 cancer deaths a year worldwide, while processed meat cause about 34,000 cancer deaths.

Bacteria communicate like brains

Bacteria are often dismissed as simple and solitary creatures but a new study shows that they use complex electrical signaling and communication mechanisms, which resemble neurons in a brain. Researchers investigated the long-distance communications of bacteria on biofilms, where millions of them are packed. The bacterial cells who live on the outer edge of the biofilm grow to a specific size and stop so that nutrients such as glutamate can continue flowing to the protected center, thus ensuring the whole bacterial population’s survival and overall resistance to chemical attacks, such as antibiotics. Researchers demonstrated that metabolic coordination among distant cells within biofilms is facilitated by electrical signals. Ion channels trigger oscillations in bacterial membrane potentials which conduct long-range electrical signals by propagating waves of charged potassium ions. Scientists suggested that bacterial behavior within biofilms function like a “microbial brain.” Interestingly, both migraines and the electrical signaling in bacteria appear to be triggered by metabolic stress. This suggests that neurological disorders like epilepsy and migraines have possibly been caused by bacterial metabolic activities. Perhaps new treatments for neurological disorders may be developed using a bacterial perspective.

Scientists made the blackest material ever

Scientists have developed the blackest material ever made – one that absorbs 99% of light coming from all angles and polarizations. The new super-black material is 26% darker than its predecessor, carbon nanotubes. The inspiration came from the white cyphochilus beetle, whose shell is capable of reflecting substantial amounts of light due to its crystalline structured scales. Scientists examined the beetle’s shell and then tried to invert its crystalline structure to absorb as much light as possible. Super-black material is created using nanoparticle rods sitting on a tiny 30 nanometer nanoparticle sphere. The super-black surface can absorb 99% of the light that ranges between 400 and 1,400 nanometer wavelengths. The resulting color is so dark that the human eye cannot comprehend it; instead, it feels as looking deep into an endless abyss or a black hole. Conveniently, the material can also be diluted into a liquid form and utilized readily in a variety of applications, such as in global desalination projects. Since blacker material absorbs more light or energy, the super-black material technology is expected to dramatically improve the efficiency of existing solar panels and optical interconnects, where fiberoptic data is relayed.

Despite that, there are more than 100 types of amino acids found in nature; only 20 of them are employed for protein synthesis. Among these 20 amino acids, excepting glycine, which does not display chirality, only the L-form of the 19 is used for protein synthesis. This is because ribosomes, where protein synthesis occurs, do not feature the utilization of D-form amino acids. As nothing in the universe exists in vain but with multiple tasks, D-amino acids have a job in the maintenance of life after protein synthesis in very different fashions. The way D-amino acids are employed in the execution and control of physiological preferences amazes scientists.

Up until recent times, D-amino acids were believed to be synthesized mostly by bacteria and plants, unlike mammals, and were considered dysfunctional as they passed, via consumption of nutrients, from bacteria and plants. However when D-amino acids were noticed for having roles as important as L-amino acids during the 1990s, the field gained significance. It was demonstrated that D-amino acids were found widely in invertebrates, vertebrates, and humans as free forms or inside proteins, undertaking critical functions in the nervous and endocrine systems. The most interesting point is the conversion of amino acids from the L-form into the D-form after the protein synthesis occurs in the peptides that are present in the venomous secretions of various animals. This conversion leads to the alteration of the peptide identity and function. Racemase and isomerase (epimerase) enzymes are utilized as they are created for this task. Usually, one or two amino acids of the D-form peptides are in D-form.

When chemist Gunther Kreil of the Austrian Academy of Sciences learned about the use of South American poisonous tree frogs (Phyllomedusa sauvagei ) during Shamanic hunting ceremonies by local Peruvian tribe (Matses), he studied this poison in detail. Participants of the ceremony first caused a burn on their chest region, then applied the poison they obtained from the frog skin over it. Diarrhea and tachycardia started within a minute, followed by a brief faintness. Once they recovered after a few minutes, they were to find themselves in a much more vigorous and exhilarated state of mind. The poison they were applying to their chest contained the dermorphin peptide, which has psychoactive, hallucinogenic effects and a D-amino acid. This peptide is a pain killer 30-40 times more effective than morphine. Among the 7 amino acids found in this peptide (heptapeptide), all are in L-form, except for one. Only the alanine, as the second in the peptide sequence, is in D-form and is produced via the isomerase enzyme from the L-alanine after the protein synthesis. G. Kreil discovered this D-form synthesizing enzyme in 2005. When this peptide was synthesized artificially in the laboratory, it did not display any biological activity or hallucinogenic effect. After a careful investigation of the case, it was found that frog skin based peptide had a D-form alanine second in its sequence; however, the one produced in laboratory had an L-form alanine. It was the presence of only one D-amino acid that made the difference in discovering the identity and function to the natural peptide in the poison.

In recent years dermorphin has started to be used as an illegal performance enhancer during horse races because of its pain killer feature. Horses on dermorphin can run longer and faster since they cannot feel the pain related to foot fatigue.

P. Kuchel of Sydney University also showed a D-amino acid presence in the peptide structured of the poison in the Platypus, a semiaquatic egg-laying mammal. Males use this poison as a weapon to fend off competitors. In 2009, Matthew Waldor and his friends at Harvard University discovered that the sugar-protein mix (matrix) called peptidoglycan found in the composition of bacterial cell walls is structured in a way to contain primarily D-alanine, D-methionine, and D-leucine. More interestingly, D-amino acids of the peptidoglycan structure were able to play a stimulatory role in coordinating the activities of other bacteria in the colony. For example, they acted as light houses in the use of florescence and helped in the formation of thin layers (bio-films) on various surfaces in bacteria. Once we understand the way D-amino acids help in communication between bacteria, it will be possible to use them as a drug. It’s possible they can be used to disintegrate bacteria that forms on teeth, in the lungs of cystic fibrosis patients, on clogs in fuel lines and water tanks, and in medical devices such as catheters.

D-amino acid containing peptides found in lobsters help maintain salinity levels and facilitate courtship in mating seasons. In recent years, D-amino acid containing antimicrobial peptides were discovered (bombinines) in the secretion glands of fire-bellied toad skins (Bombina sp). In this peptide, the second amino acid was in the D-form (D-allo-isoleucine). Two different peptides were found containing D-amino acids in the second position of the amino acid sequence of the poison secreted by Platypus males.

One of the reasons for D-amino acids to exist in animal poisons is that peptides containing D-Amino acids can not be easily degraded by the proteases (peptide bond breaking enzyme) of the host or opponents. Even though proteases can quickly and easily digest proteins composed of L-form amino acids, they struggle to do so with peptide bonds between D and L form amino acids. Pharmaceutical companies are trying to add D-amino acids to the peptide-structured drugs to prevent the quick degradation of peptides and proteins used for treatments when ingested. However, the addition of a D-form amino acid brings the high possibility of a situation that changes the function of a peptide or protein, or causes the loss of a protein. Nonetheless, specialists in this field point out that at least some amount of the D-amino acids that are produced by trillions of bacteria found on the skin, in the digestive track, and among other parts of the body can still be utilized for human health and convenience.

The D-serine of the mammalian nerve systems (glial cells and neurons), the D-aspartate of the neuro-endcorine, endocrine tissues, and testicles, and the D-alanine and D-aspartate amino acids of aquatic animals are abundant. D-Serine in the brain is synthesized by the conversion of L-serine into D-serine by the serine racemase enzyme. D-aspartate is in charge of hormone synthesis and secretion, and the regulation of spermatogenesis, and is produced by aspartate racemase and degraded by D-aspartate oxidase. It is also predicted to play role in the synthesis of hormones such as melatonin and testosterone.

As of now, four enzymes have been detected to be in charge of D-amino acid metabolism in mammals. How these are controlled is still unknown.

Publications pertaining to the association of epilepsy, schizophrenia, and bipolar disorders with enzymes in charge of D-amino acid synthesis and break down have increased in recent years. From this point of view, serine racemase and D-amino oxidase can be used to develop new potential drugs regarding the treatment of similar NMDA receptor associated diseases.

The first data demonstrating the use of D-amino acids in saliva in organs outside of the human brain was obtained by Y. Nagata and his team at the University of Nihon, Tokyo. A team led by Kenji Hamase of the Kyushu University discovered high levels of D-alanine storage in the beta cells of the rat pancreas. Kuchel, who discovered the enzymes converting the L-amino acids in to D forms in duck-billed Platypus poison, also found similar enzymes in the hearts of mice and humans. According to Kuchel, the physiological roles of those in humans remain to be unknown.

As a result, the common feature of toxins and antimicrobial peptides that are produced and secreted by animals is to contain D-amino acid. These peptides can be the source of a potential drug in the treatment of diseases such as cystic fibrosis, schizophrenia, and macular degeneration of the eye.

These prove that, especially in biology, exceptions are common; life is enriched via examples of extraordinary lives, processes, and mechanisms in unexpected places by unpredictable molecules or interesting reactions that can’t be predicted. Such discoveries help deepen our wonder at the intricacy and wisdom of creation.