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	<title>biological &#8211; Fountain Magazine</title>
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		<title>Timing of Medication</title>
		<link>https://fountainmagazine.com/all-issues/2019/issue-127-jan-feb-2019/timing-of-medication/</link>
		
		<dc:creator><![CDATA[Louima Cunningham]]></dc:creator>
		<pubDate>Tue, 01 Jan 2019 22:20:43 +0000</pubDate>
				<category><![CDATA[Issue 127 (Jan - Feb 2019)]]></category>
		<category><![CDATA[biological]]></category>
		<category><![CDATA[body]]></category>
		<category><![CDATA[cancer]]></category>
		<category><![CDATA[cell]]></category>
		<category><![CDATA[cells]]></category>
		<category><![CDATA[clock]]></category>
		<category><![CDATA[clocks]]></category>
		<category><![CDATA[cycles]]></category>
		<category><![CDATA[damage]]></category>
		<category><![CDATA[day]]></category>
		<category><![CDATA[dna]]></category>
		<category><![CDATA[drug]]></category>
		<category><![CDATA[drugs]]></category>
		<category><![CDATA[genes]]></category>
		<category><![CDATA[health]]></category>
		<category><![CDATA[periods]]></category>
		<category><![CDATA[repair]]></category>
		<category><![CDATA[researchers]]></category>
		<category><![CDATA[rhythms]]></category>
		<category><![CDATA[Science]]></category>
		<category><![CDATA[time]]></category>
		<category><![CDATA[treatment]]></category>
		<guid isPermaLink="false">http://107.21.79.195/all-issues/2019/issue-127-jan-feb-2019/timing-of-medication/</guid>

					<description><![CDATA[We are all aware of the fact that there is certain rhythm and order in the movement of the sun and the earth, as well as other planets along their pre-assigned orbits. This order has ongoing without a glitch for possibly billions of years. The day and the night become longer and shorter on a [&#8230;]]]></description>
										<content:encoded><![CDATA[<p><img fetchpriority="high" decoding="async" class=" size-full wp-image-6664" src="https://fountainmagazine.com/wp-content/uploads/2019/01/08b-0ca.jpg" alt="Timing of Medication" width="1920" height="1200" srcset="https://fountainmagazine.com/wp-content/uploads/2019/01/08b-0ca.jpg 1920w, https://fountainmagazine.com/wp-content/uploads/2019/01/08b-0ca-300x188.jpg 300w, https://fountainmagazine.com/wp-content/uploads/2019/01/08b-0ca-1024x640.jpg 1024w, https://fountainmagazine.com/wp-content/uploads/2019/01/08b-0ca-768x480.jpg 768w, https://fountainmagazine.com/wp-content/uploads/2019/01/08b-0ca-1536x960.jpg 1536w" sizes="(max-width: 1920px) 100vw, 1920px" /></p>
<p>We are all aware of the fact that there is certain rhythm and order in the movement of the sun and the earth, as well as other planets along their pre-assigned orbits. This order has ongoing without a glitch for possibly billions of years. The day and the night become longer and shorter on a schedule, and this is how we can develop calendars by calculating seasons, months, and days.</p>
<p>The movements of celestial bodies impact in multiple ways the biosphere in which we live. Trees shed leaves or bloom, some animals hibernate, and others enter reproduction season.</p>
<p>Time advances not linearly but in cycles. The internal systems by which the metabolisms of living things are organized are made to work according to numerous biological clocks that depend on the cyclical nature of time. These biological clocks are sometimes based on the length of a day and sometimes on long cyclical patterns that may span years. Periods of sunspots followed by explosions on the surface of the sun, for example, cause the reproduction cycles of populations of lynx and hare to peak every 11 years. This cycle is also tied to an increase in the production of wheat and certain species of fish breeding in abundance. The internal clock of the human metabolism is likewise organized during the day.</p>
<p>Scientists have long since noticed and started to research the different reactions of the human body to different time intervals throughout the day. It was realized that pains eased during certain times of day and intensified during others. There are also rising and falling cycles for hormones and the nervous system. These coincided with periods of hunger, meals, and sleep.</p>
<p>It has been found that certain changes occur in the physical and mental makeup of humans during the year, seasons, month and day. Researchers agree that every human has a unique physical and mental clock, but there are generally broad similarities. The scientific field researching these is called chronobiology. Researchers in chronobiology have demonstrated that certain changes occur, according to time periods, in the endocrine and autonomic nervous system as well as the body’s water and salt balance.</p>
<p>Other studies have focused on biological changes with respect to space.  The regulation of the body’s biological rhythm is found to be influenced by the movements and positions of the earth on its own axis, the moon around the earth, and the earth around the sun. As the atmospheric environment changes, so do living things.</p>
<p>Towards the end of the 1960s, scientists found that a synthetic corticosteroid drug called methylprednisolone was more reliable for treatment of arthritis and asthma when taken in the morning rather than at other times. “These rhythms might affect responses to cancer treatment,” says Eric Holland, a neurosurgeon at Fred Hutchinson Cancer Research Center, adding that there are optimal times for administrating radiation in mice.</p>
<p>A forty-three-year-old patient with 27 tumors in her liver whose drug treatment for colon cancer did not work volunteered for a trial and recovered from cancer after rescheduling the administration of her drugs. Oncologist Francis Lévi was so amazed by this effect on the patient that he became a supporter of chronotherapy, or time-cycled treatment. To Lévi, who works at Warwick Medical School in the United Kingdom, timing can prove even more important than dose. In the trial, the patient was first wired up to a device like a clock so that metabolic rhythms could be better monitored. The patient had extremely regular sleep-wake cycles, which Dr. Lévi believed was likely to have contributed to the success of the treatment. This novel understanding did not spread before because researchers could not explain molecular foundations of daily rhythms, or circadian cycles, until 10 years ago, and clinical data was inconsistent.</p>
<p>Lévi and his team randomly divided 186 chemotherapy patients into two groups. They administered medicine to one group in accordance with the participants’ biological clocks and to the other group according to the standard procedure. More than 50% of the former responded well, whereas the rate remained at only 29% for the latter. Another study found that 298 patients who had heart operations in the morning were twice as likely to have unsuccessful operations and develop complications as compared to 298 patients who had operations in the afternoon. To prevent the effects of the surgeon’s selection of patients, the same surgeons operated both in the morning and in the afternoon.</p>
<p>The 2017 Nobel Prize for the field of physiology was awarded to three American biologists, Jeffrey C. Hall, Michael Rosbash, and Michael W. Young, for their study into biological rhythms. Their research presents remarkable insights into the reasons why the biological rhythms of plants, animals and humans are created in coordination with the movements of the earth. The researchers used the fruit fly, an exemplary organism, and found the genes that controlled its daily biological rhythm. Discovering that these genes initiate the secretion of a protein that accumulated overnight and dwindled during the day, the researchers revealed that these proteins caused a mechanism made to work in a certain rhythm when the time was right. It was like a watch had been set inside the fruit flies’ cell.</p>
<p>It is estimated that approximately 80% of our genes follow night and day rhythms (and also possibly seasonal rhythms). Indeed, it has been identified that fits of asthma and epileptic seizures develop according to certain daily rhythms. The products expressed by the genes that are active in most tissues peak early in the day and in the afternoon and reach lows after dinner and before bedtime. All these activities are carried out by the “molecular biological watches” written in our genes. If we can better understand our internal clocks, researchers believe they could discover breakthroughs in the treatment of up to 150 diseases, including cancer.</p>
<h3>The time machine</h3>
<p>Many tissues in the body have their own time schedules arranged by regular cycles in which numerous innate “clock genes” envelop the body like a net. The timing of all these clocks can have a powerful impact on metabolic activity, the increase in the number of immune cells, and many other things. “The best advice I can offer is don’t mess with your body clock,” says Professor Derk-Jan Dijk, director of the Surrey Sleep Research Center in the city of Guildford, England. [1]</p>
<p>The biological clock is an extraordinary system. A group of neurons in the hypothalamus in the brain, called the suprachiasmatic nucleus, are assigned as the central clock for all these activities in the body. The signals from this region play a role in initiating and finalizing the activities of the genes, which channel drugs to their molecular targets and help produce enzymes that destroy drugs. “Clock” genes are found virtually in every organ and tissue, and they are particularly important during cancer treatments, because interventions performed during such critical processes as the cycle of cellular division and growth and repair of DNA damage become significant for killing cancerous cells.</p>
<p><em>Cisplatin</em>, an effective drug used for almost 50% of solid tissue cancers, kills malignant cells by binding to their certain parts, yet because the drug is toxic to the kidneys, lungs, and nervous system, efforts have been made to develop less toxic versions. Just as a cell develops cancer due to DNA damage, so is the destruction of the cancerous cell started by damaging the cell’s DNA. For this reason, some drug trials focus on blocking the DNA repair of the cancerous cell.</p>
<p>Observations made on the appearance and repair of DNA damage showed, as expected, that DNA damage was repaired more easily during certain periods of the day, leading to the hope that cancer can be treated through DNA repair if drugs are administered in tandem with this cycle. If optimal periods could be established for numerous normal cells to repair their DNA damage, administration of drugs can both optimize the useful effects of drugs and minimize toxicity of drugs with toxic properties.</p>
<p>The human organism and cells are not static, but dynamic. The behavior of our cells changes dramatically before and after a meal. Similarly, the movement and frequency of numerous materials circulated in our body when we are sleeping are different from when we are awake. Therefore, if the amount of a material doubles after lunch followed by a cup of coffee and if the material negates a drug taken by a patient, then that drug can be administered when this material is at its lowest in the body. For example, if the material is at a minimum at two in the morning, the drug can be given at that time, ensuring that the effect is maximized.</p>
<p>The studies into “<em>man, the unknown</em>” are bound to lead to many more discoveries about both treatments of diseases and the knowledge, power, and wisdom waiting to be found in the creation.</p>
<h3>Note</h3>
<ol>
<li>https://woolcock.org.au/new-2/why-you-shouldnt-mess-with-your-body-clock-expert</li>
</ol>
<h3>References</h3>
<ul>
<li>Leder, K., Pitter, K., LaPlant, Q. (2014). Mathematical Modeling of PDGF-Driven Glioblastoma Reveals Optimized Radiation Dosing Schedules. <em>Cell. </em>Cilt <em>156</em>, Sayı 3, s. 603-616.</li>
<li>Lévi, F., Zidani, R. &amp; Misset, J.-L. (1997): Randomized multicentre trial of chronotherapy with oxaliplatin, fluorouracil, and folinic acid in metastatic colorectal cancer. <em>Lancet </em>350, 681–686.</li>
<li>Peeples , L. (2018). Medicine’s secret ingredient — it’s in the timing. Synchronizing drug delivery with a patient’s body clock can yield clear benefits. But will the data be enough to overcome long-standing hurdles? <em>Nature 556</em>, 290-292 (2018).</li>
<li>“Why You Shouldn’t Mess with Your Body Clock: Expert,” woolcock.org.au. August 7, 2018.</li>
</ul>
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			</item>
		<item>
		<title>Physiological Prevention of Cancer</title>
		<link>https://fountainmagazine.com/all-issues/2009/issue-72-november-december-2009/physiological-prevention-of-cancer/</link>
		
		<dc:creator><![CDATA[Louima Cunningham]]></dc:creator>
		<pubDate>Sun, 01 Nov 2009 00:00:00 +0000</pubDate>
				<category><![CDATA[Issue 72 (November - December 2009)]]></category>
		<category><![CDATA[actions]]></category>
		<category><![CDATA[behavior]]></category>
		<category><![CDATA[biological]]></category>
		<category><![CDATA[cancer]]></category>
		<category><![CDATA[cell]]></category>
		<category><![CDATA[cells]]></category>
		<category><![CDATA[connected]]></category>
		<category><![CDATA[consequences]]></category>
		<category><![CDATA[death]]></category>
		<category><![CDATA[entire]]></category>
		<category><![CDATA[events]]></category>
		<category><![CDATA[Health & Medicine]]></category>
		<category><![CDATA[healthy]]></category>
		<category><![CDATA[human]]></category>
		<category><![CDATA[individual]]></category>
		<category><![CDATA[means]]></category>
		<category><![CDATA[mistakes]]></category>
		<category><![CDATA[process]]></category>
		<category><![CDATA[system]]></category>
		<category><![CDATA[systems]]></category>
		<category><![CDATA[Systems biology]]></category>
		<category><![CDATA[universe]]></category>
		<guid isPermaLink="false">http://107.21.79.195/all-issues/2009/issue-72-november-december-2009/physiological-prevention-of-cancer/</guid>

					<description><![CDATA[The fine balance and order seen in living beings provides us with clues and directions as to which behavior is most appropriate. Socially acceptable behavior may differ from one culture to another; however, there are universal principles and values which are part of a balanced behavior and attitude in any given situation. We shall not [&#8230;]]]></description>
										<content:encoded><![CDATA[<p>The fine balance and order seen in living beings provides us with clues and directions as to which behavior is most appropriate. Socially acceptable behavior may differ from one culture to another; however, there are universal principles and values which are part of a balanced behavior and attitude in any given situation.</p>
<p>We shall not dwell in detail on each of the great human virtues which distinguish human beings from all other creatures. However, one can gain a great deal of insight from studying deviated or unbalanced behavior, specifically in the context of living entities. A field of biology that has recently been recognized as “Systems Biology” is the detailed study of how an entire system is accommodated and “corrected” when there are deviations from “the most beneficial state.” These deviations consist of either a loss or an excess of a functional element within that system.</p>
<h3><b>Systems biology</b></h3>
<p>The universe around us is a place for exhibiting and training our skills and abilities; it is here that we are taught the lessons we need to learn during our journey through life. Looking at the mechanisms by which biological systems work we can see that events occur at exactly the time they are required to and that there is a purposeful and meaningful logic in the exact sequence of events. In how events take place one can see perfect order and a great deal of knowledge and wisdom. In fact, the human mind is awestruck by the orchestra of events that simultaneously takes place with the utmost precision and accuracy. Hence, the perspective provided by “Systems Biology” is an alternative to the reductionist viewpoint that accepts causality as the basis of understanding and explaining living systems.</p>
<p>One can see that when an event takes place in space and time it is not isolated, nor is it a part of a simple cause-effect mechanism. The inter-relation and connection of each event with every other event that occurs within a cell is a perfect example of such a system. This aspect of living biological systems gives us insights into the far-reaching consequences of our daily actions. On the surface, our daily actions may seem to be unconnected, irrelevant, and perhaps even meaningless; however, in reality our actions have a global effect on this universe. Just as all the parts of a tree are directed towards producing the fruit, every part of the universe is directed towards and subjugated for human kind, the fruit of the universe. It is as if the human being lies at the nexus of all other systems in the universe, as if it is connected to and is being served by every other existing system. As a result, all other systems in the universe are somehow connected to us. This means that our actions will have much greater consequences than we ever imagined, thus placing on our shoulders duties and responsibilities far greater and above all other creatures. Therefore, we are accountable for all our actions.</p>
<h3><b>Cancer as a distorted state of cellular behavior</b></h3>
<p>In systems biology, the changing of one component of the system, for example, an excess or a deficiency from the optimal (most balanced, most appropriate and the most beneficial) quantity, will lead to dramatic changes in all other components within that system. A disease can be defined as a state of affairs that has one or more components of the system that is being modified or changed in some manner. In this case, we shall take the example of cancer. The development of cancer in the human body is multi-stepped and it may take several years before the cancer is detected by modern technology. In fact, cancer begins when there is an error at the molecular level that is not put right, deep inside the cell. This error can be a single mutation in the reference manuals or “codes” called genes, or it can be another factor that is either inadequate or excessive. This mutation can happen in many ways; but why does it happen? There certainly must be an important reason for it happening. If we choose to understand the message then we will see that one of the purposes of this change could be to enable us to learn from the consequences of our actions.</p>
<p>How is this so? One only truly appreciates a system when it no longer functions properly. Hence, we can see that cancer may be the consequence of a single mistake that has not been corrected in one gene. This means that a single mistake can be amplified in such a way that it affects the entire being, and this is only because each event is connected to every other event. Understanding this will enable us to become more aware of our actions and to think more about their consequences before we act.</p>
<h3><b>The connection between faith, moral virtue and the biological entity</b></h3>
<p>In a healthy individual, cancer cells are always being created, however, they are immediately destroyed by specialized immune cells. The formation of full-blown cancerous tissue happens when the initial cancer cell is not destroyed. This clearly indicates that the health of the individual depends on the ability to destroy the cancer cell in the first instance. The tolerance or acceptance of the cancer cell as a healthy cell only occurs when the immune cells required for the destruction of the cancer cell are not activated or sensitized. In a similar manner, the moral and spiritual integrity of an individual depends on how aware they are of their mistakes, or indeed, whether they recognize their mistakes as mistakes. This is exactly the same process that is referred to as repentance in the three monotheistic religions. The one who repents feels remorse for their sins/mistakes and turns toward The One who will forgive sins. In an ideal society, this process is manifested as actively and strategically forbidding evil (or injustice) and advocating good, as without this process, without the application of good social justice will spread.</p>
<p>When the ability to recognize or sense a mistake is lost in an individual, then the person concerned will fail to regret any mistakes they make and begin to think all their actions are correct. Such a negative process is a delusion which leads the individual to think that they never commit any mistakes. The consequence of this process is a downward spiral in moral values and accountability of the individual and can be directly likened to a biological system that has allowed the growth of cancer. The individual who has committed many mistakes and who is oblivious or neglectful in repairing or making up for these mistakes is like a cancer cell that disrupts the entire tissue in which they are found. Unaccounted for (or unrepaired or mis-repaired) mistakes that have not been regretted will have great repercussions not only on the individual but on the entire community in which they live. These mistakes become part of a vicious cycle of events that lead the individual to even more excessive or deficient behavior, such as ingratitude, disrespect or prejudice. The individual becomes unaware of other systems around them, and becomes oblivious of the rights and needs of others, eventually acquiring arrogance, avarice, insolence, and finally turning into a vicious but weak monster that not only hurts itself but also others.</p>
<p>In a similar vein, the cancer cell can be likened to an individual who feels no remorse and no sense of urgency when a mistake or a sin is committed. The genetic mutations or unrepaired error(s) in cancer cells lead to loss of sensitivity of the environment. Cancer cells have many defects in the specific DNA repair mechanisms, therefore there is a high degree of chromosome instability in these cells.1 Furthermore, they are not affected by the signals that affect healthy cells, because all the check points in these cells have become desensitized. They are extremely aggressive cells that invade the tissues in the surrounding areas around them and rob the tissues of their primary resources. The cancer cells also do not die in the same way that healthy cells are discharged from duty. Cancer cells explode and die, thereby disrupting the entire system even more, while death in healthy cells is very organized and does not disturb the system.2</p>
<p>The degree of sensitivity of an individual to the validity of their actions depends on their conscientious understanding of what is right or appropriate and what is not. This is directly dependent on their reference point. If the reference point is from an all-seeing, all-knowing, and all-hearing source (i.e. a source that has the ability to see all the systems at once), then they can be sure that their action will be appropriate. Any other reference point that does not have a connection to this source is bound to mislead or lead to inadequate action under given conditions.</p>
<p>Similarly, the behavior of healthy cells is such that it is appropriate (or, as biologists would say, optimal) for the rest of the systems it is connected with. Hence, the events that place in a given cell are complementary and productive for the specific condition or configuration in space and time. When there is an error in any of the events or processes, it can be repaired, but when there is no error, growth continues. This indicates that the cell must have unity and a complementary nature with every other system in space and time in order to sustain health.</p>
<p>On the other hand, in a spiritually and biologically healthy individual, mistakes are repaired and are not long-lived, just like in the healthy cells that work unceasingly for the benefit of the being in which they are found. They respond to all their own needs as well as to those around them, they are not oblivious of others and they respect the individual rights of the people in their lives, especially the ones who have given the most to them, for example, parents, family, and friends. The balanced individual learns from the mistakes they commit, and they take care not to commit them again. In this way, as each action is connected to all the other actions of other entities, this individual becomes a means of an amplifying, productive cycle that has far-reaching consequences for the entire community.</p>
<p>The human being is brought into this world pure and with a perfect constitution. However, each individual&#8217;s unrefined ego must be trained so it can acquire the ability to recognize the mistakes that will interrupt its connection with the rest of the universe. These mistakes can only be recognized through great virtues like faith and knowledge of the Creator, knowledge of the self, gratitude, honesty, trustworthiness, sincerity, and humility, as well as perseverance in the face of adversity. It as if one who has been given these values can take the correct precautions to prevent any possible spiritual contamination, just as in a healthy biological system. Hence, faith enables a believer to behave in conjunction and in harmony with the myriad of systems in the visible and invisible universe with which it is connected. On the other hand, having unconscious faith or a lack of belief means all these connections have now been destroyed or are not strong enough. This isolates the individual from the multi-dimensional system of which it is part, finally leading to the self-destruction of the individual.</p>
<p><em>Sebnem Unlu, PhD, is a Research Faculty at University of Pittsburgh Cancer Institute, USA.</em></p>
<h3><b>Note</b></h3>
<ol>
<li>R.A. Weinberg. The Biology of Cancer, Garland Science, 2006, p. 458.,</li>
<li>In cancer cells, programmed cell death, which is the mode of cell death in all healthy cells, is prevented. This means the mode of cell death in these cells will be another type of cell death, such as &#8220;necrosis,&#8221; where the cell explodes to release its contents, thereby disturbing the cells all around it.</li>
</ol>
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			</item>
		<item>
		<title>Can Genes Alone Explain Everything?</title>
		<link>https://fountainmagazine.com/all-issues/2008/issue-66-november-december-2008/can-genes-alone-explain-everything/</link>
		
		<dc:creator><![CDATA[Louima Cunningham]]></dc:creator>
		<pubDate>Sat, 01 Nov 2008 00:00:00 +0000</pubDate>
				<category><![CDATA[Issue 66 (November - December 2008)]]></category>
		<category><![CDATA[biological]]></category>
		<category><![CDATA[complex]]></category>
		<category><![CDATA[effects]]></category>
		<category><![CDATA[expression]]></category>
		<category><![CDATA[gene]]></category>
		<category><![CDATA[genes]]></category>
		<category><![CDATA[genetic]]></category>
		<category><![CDATA[genetics]]></category>
		<category><![CDATA[human]]></category>
		<category><![CDATA[humans]]></category>
		<category><![CDATA[information]]></category>
		<category><![CDATA[inheritance]]></category>
		<category><![CDATA[knowledge]]></category>
		<category><![CDATA[life]]></category>
		<category><![CDATA[living]]></category>
		<category><![CDATA[organism]]></category>
		<category><![CDATA[organisms]]></category>
		<category><![CDATA[proteins]]></category>
		<category><![CDATA[Science]]></category>
		<category><![CDATA[The Central Dogma]]></category>
		<category><![CDATA[trait]]></category>
		<category><![CDATA[traits]]></category>
		<guid isPermaLink="false">http://107.21.79.195/all-issues/2008/issue-66-november-december-2008/can-genes-alone-explain-everything/</guid>

					<description><![CDATA[Genetics is probably one of the fastest developing contemporary sciences with an incredibly large accumulation of knowledge. This knowledge of genetics has been extensively utilized in a broad spectrum of areas including unveiling the genetic secrets of different traits. This has paved ways to improving human health and sustaining agriculture, and preserving biological diversity on [&#8230;]]]></description>
										<content:encoded><![CDATA[<p>Genetics is probably one of the fastest developing contemporary sciences with an incredibly large accumulation of knowledge. This knowledge of genetics has been extensively utilized in a broad spectrum of areas including unveiling the genetic secrets of different traits. This has paved ways to improving human health and sustaining agriculture, and preserving biological diversity on this planet. In addition to its practical implications, genetics is a major issue for philosophy, ethics, ecology, and economy. Genetics has also been readily incorporated into the public perspective through different means of mass communications, that is, electronic and print media.</p>
<p><span id="more-964"></span></p>
<p>The complex nature of genetics and its wide implications for all living organisms from viruses to humans provide raw materials for creative imaginations. In the present scenario, many consider it vital to comprehend all the genetic information necessary to support life on this universe. One of the common constraints on the understanding of genetics is the assumption that genes are the sole causes of all activities of living organisms and can explain all aspects of biological life on earth. For example, some believe the behavior and development of an organism can be predicted, if its genetic information is known-this belief is called “genetic determinism.” However, it is true that neither all aspects of inheritance are in all cases well explained, nor that the mere effect of genes on complex traits is well interpreted. The boundaries of the effects of genes on physical existence, development, survival, and the behavior of organisms are not always simple and straightforward. The capacity of humans for genetic manipulation-at least as it is commonly assumed or claimed-is limited in several ways and some of the basic causes of such barriers have yet to be explained. The focus of this article is to point out the limitations on attempts to appoint genes as the driving force of life.</p>
<h3><b>The Central Dogma</b></h3>
<p>Genes are small fragments of genomic DNA, encoding mRNAs which are later translated into proteins that participate in different biological metabolisms, hence conferring different traits on an organism. The biological functions and transmission patterns of genes over generations were being investigated well before the discovery of DNA as hereditary material and date back to the recognition of Mendel’s laws in the early twentieth century. Genetic information is coded in the form of a short string of DNA called a gene, which is employed in the expression of a trait(s) or mechanism(s) through synthesizing a chain of amino acids called proteins. These proteins either can be stored in different body parts or serve as enzymes in various biochemical reactions such as fighting infections. This flow of genetic information from gene–mRNA–protein synthesis is called the “Central Dogma” in biological sciences. In this biological doctrine, a very solid and predictable mechanism is assumed. Prior to the release of the human genome sequence information, the number of genes in the human genome was estimated as ~100,000. However, this estimate was far more than the actual number of genes (~35,000), which led us to question the validity of the “Central Dogma” as an explanation of the complexity of human beings. Out of these ~35,000, only 300 genes are unique to the human species.<a><b><sup>1</sup></b></a> This is another blow to the authenticity of the original central dogma theory. Are those 300 genes the foundation of all humankind and do they distinguish us from the rest of the mammals? Reducing humankind to its biology and explaining it based on genes has been questioned extensively and could be the subject of another discussion. But even considering such a view valid for purely practical purposes, the big gap between humans and other mammals cannot be due to the existence of this small number of genes.</p>
<p>Recent scientific discoveries have revealed a key point about the structure of genes-that each gene has a set of sub-segments called exons. Each exon can make a new protein. Hence, the gene can be the template for more than one protein. In the presence of other genes and proteins, the code of a particular gene can yield different kinds of proteins under variable circumstances. The flow of information can be both ways, and hence there are no predetermined factors controlling the flow of information. That means, we might know the information on what genes are present, and we can even decode it to know what is in there, but we cannot be sure what result (proteins in this context) will come out at the end when it is in the context of real life.</p>
<h3><b>From physical characteristics to their genetics </b></h3>
<p>Working back from a particular trait and trying to infer the genes that are involved in expression of such trait is a different approach to reveal the role of genes but surely it is not an easy task. Traits that are expressed by a single gene or a small number of genes are known as Mendelian/qualitative traits and their pattern of inheritance is simple and detection of the gene(s) is straightforward. Some of the disease resistance in plants and blood groups in humans are classic examples of Mendelian traits. The main distinction between such traits and the quantitative ones is their discreteness. For example a human being can have only one of four blood types: A, B, AB or O, and each of these groups is solid and no other blood types exist in between. In this type of trait, the role of a particular gene(s) is usually predictable and the pattern of transmissions over generations both for the future and the past can be inferred.</p>
<p>However, only a small percentage of traits is qualitative and expresses Mendelian inheritance. Most traits, such as intelligence, skin color in humans, height of an organism, seed yield of a grain, and diseases that have genetic causes like cancer, are quantitative traits and complex in nature. The ultimate phenotype (what we can see or measure from a trait) emerges from the joint effect of many genes as well as interaction with the particular environment in which the individual develops. The number of genes that is involved in the expression of a particular trait can be hundreds or even more. An objective assessment of each trait and quantification (called the phenotype) is impractical in most cases and could lead to another discussion. But assuming that we can measure a trait feasibly, the inference of genetic bases could still be controversial. Considerable efforts have been devoted to unveiling the effect of genes in the expression of complex traits whose inheritance pattern deviates from Mendelian inheritance. A special genetic technique, known as genetic mapping, is used to identify multiple genes that underlie a complex trait and this has practical applications for crop improvement. In humans, efforts are directed toward the detection of genes which predispose to complex inherited diseases. In this type of situation, the effects of genes on a trait are additive and can only explain a certain amount of change in the trait that we are interested in. Detection of all genes involved in the expression of a quantitative trait is practically impossible. The environment is an important factor with a pivotal role in the expression of such traits. The term “environment” is not restricted to what is present within the cell or surrounding the cell or individual. It rather refers to larger scale effects in the process of biological life that cannot be explained by genetics and the term can be used interchangeably with non-genetic effects.</p>
<p>One of the most striking examples of the role of genes on the expression of the phenotype is the presence of differences between identical twins. Despite the fact that they have completely identical sets of genes, studies have shown that twins can indicate different degrees of psychiatric diseases such as bipolar disorder.<a><b><sup>2</sup></b></a> Similar phenomena may be observed in crop species. In crop breeding programs different varieties are usually tested in different environments. In most cases varieties rank differently based on their performance in different environments.<a><b><sup>3</sup></b></a></p>
<h3><b>Genetic background</b></h3>
<p>Genes that do not code any information for the trait of interest can also be a part of the process of expression of the trait. In other words, certain genes can be employed to stop or alter the function of a particular gene. Modifying the utility of a gene can also be done by a series of complicated reactions within each organism through mechanisms known as epigenetics. This type of alteration in gene function is also observed empirically during the process of transferring genes between different organisms through genetic engineering.<a><b><sup>4</sup></b></a> Most transferred genes are silenced (turned off) by different mechanisms in a new organism regardless of patterns of inheritance. This is particularly interesting because it clearly indicates that the existence of a particular gene in the body does not necessarily guarantee that it will be functional. Even if it is functional in one individual, it might be silent in others. Even if a gene is functioning in all the individuals carrying it, the degree of expression may be variable.</p>
<h3><b>The end of genetic determinism </b></h3>
<p>With the discovery of the code of genes, we now know more about the biology of living organisms than ever before, as new genetic tools have enabled us to better understand what kind of information is stored in each gene.</p>
<p>Most of the traits of living organisms are affected by the existence of many genes as well as non-genetic effects (denoted as environment in genetics). Although Mendelian traits can be predictable to some degree, yet we can not completely infer all the genes that are employed in the expression of a complex trait, nor the amount of contribution from each single gene and portion attributed by non-genetic factors. So we cannot determine the presence of genes by simply observing the phenotype or expression of a trait.</p>
<p>Considering each individual gene separately will allow us to understand its possible functions more clearly and accurately. Nevertheless, the knowledge of possible functions and structure is not enough to predetermine if the information coded in the gene will be used by the organism, and, even if it will be used, how much of that information will be processed is uncertain. Whether the information that is processed will be observed or not is another ambiguity.</p>
<p>Assuming that we can and will know all components of life by having the knowledge of genes is known as genetic determinism. In some cases, genes are described as independent entities that drive living organisms and manage life because of the assumption that their presence will be enough to predetermine all the biology and the behavior of an organism.</p>
<p>Simply, in order for a gene to be an independent agent by itself, it needs to have the knowledge of all other genes as well as all the non-genetic factors for expression of a simple trait. In reality, genes contain a very limited amount of knowledge which makes them no more than tools or parts of living organisms that are employed in the existence of life on earth. Biological life itself is incredibly complex and its sustainability requires a more comprehensive knowledge that is beyond our current understanding based on the genetic code.</p>
<p><em>Seyyidhan Mirza is a PhD candidate of Plant Breeding, Genetics, and Genomics. He can be contacted at seyyidmirza@gmail.com.</em></p>
<h3><b>Notes</b></h3>
<ol>
<li>Siepel A., M. Diekhans, B. Brejová, L. Langton, M. Stevens, C. L.G. Comstock, C. Davis, B. Ewing, S. Oommen, C. Lau, H. Yu, J. Li, B. A. Roe, P. Green, D. S. Gerhard, G. Temple, D. Haussler, and M. R. Brent. 2007. “Targeted discovery of novel human exons by comparative genomics.” Genome Research. Cold Spring Harbor Laboratory Press; ISSN 1088-9051/07; www.genome.org</li>
<li>Cardno, A. G., Rijsdijk, F. V., Sham, P. C., Murray, R. M. &amp; McGuffin, P. “A Twin Study of Genetic Relationships Between Psychotic Symptoms.” 2002. Am. J. Psychiatry 159, 539-545</li>
<li>Epinat-Le Signor, C., S. Dousse, J. Lorgeou, J.B. Denis, R. Bonhomme, P. Carolo, and A. Charcosset. 2001. “Interpretation of genotype x environment interactions for early maize hybrids over 12 years.” Crop Sci. 41:663–669</li>
<li>Kooter, J.M., Matzke, M.A., and Meyer, P. 1999. “Listening to the silent genes: Transgene silencing, gene regulation and pathogen control.” Trends Plant Sci. 4: 340–347</li>
</ol>
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		<title>Water: The Molecule of Life</title>
		<link>https://fountainmagazine.com/all-issues/2008/issue-62-march-april-2008/water-the-molecule-of-life/</link>
		
		<dc:creator><![CDATA[Louima Cunningham]]></dc:creator>
		<pubDate>Sat, 01 Mar 2008 00:00:00 +0000</pubDate>
				<category><![CDATA[Issue 62 (March - April 2008)]]></category>
		<category><![CDATA[amino]]></category>
		<category><![CDATA[biological]]></category>
		<category><![CDATA[cell]]></category>
		<category><![CDATA[cellular]]></category>
		<category><![CDATA[channel]]></category>
		<category><![CDATA[earth]]></category>
		<category><![CDATA[figure]]></category>
		<category><![CDATA[fold]]></category>
		<category><![CDATA[folding]]></category>
		<category><![CDATA[hydrogen]]></category>
		<category><![CDATA[ions]]></category>
		<category><![CDATA[life]]></category>
		<category><![CDATA[linear]]></category>
		<category><![CDATA[living]]></category>
		<category><![CDATA[molecule]]></category>
		<category><![CDATA[molecules]]></category>
		<category><![CDATA[oil]]></category>
		<category><![CDATA[protein]]></category>
		<category><![CDATA[proteins]]></category>
		<category><![CDATA[Science]]></category>
		<category><![CDATA[water]]></category>
		<guid isPermaLink="false">http://107.21.79.195/all-issues/2008/issue-62-march-april-2008/water-the-molecule-of-life/</guid>

					<description><![CDATA[The sustenance of all known life-forms relies heavily on water, and almost all living things are mostly composed of water. The chemistry of biological reactions is based on water, which renders conditions suitable for living things also on the global scale. Because water is indispensable for maintaining life, scientists first look for traces of it [&#8230;]]]></description>
										<content:encoded><![CDATA[<p>The sustenance of all known life-forms relies heavily on water, and almost all living things are mostly composed of water. The chemistry of biological reactions is based on water, which renders conditions suitable for living things also on the global scale. Because water is indispensable for maintaining life, scientists first look for traces of it when searching for extraterrestrial life. As the habitat for many life-forms, seventy-five percent of the earth’s surface is covered with water, which is one of the most abundant substances on earth. Ironic as it may seem, water-one of the simplest and undoubtedly the most ubiquitous liquids -proves itself perhaps the most unusual molecule on our blue planet.</p>
<p><span id="more-880"></span></p>
<p>Most, if not all, of water’s anomalous properties make life possible. To name a few of its many oddities, water is the only material that naturally exists in all possible forms (solid, liquid, and gas) on earth. Of all known chemical compounds, water has the second highest capacity to store heat, which is crucial for climate regulation and keeping living organisms’ body temperatures constant. Water is the second best heat-conducting liquid (after mercury), and this helps large masses of water to reach uniform temperatures quickly. Water has an astonishingly high heat of vaporization which eases body temperature regulation for humans and animals via providing a cooling system through sweating. This high heat of vaporization also prevents dehydration.</p>
<p>The absorption coefficient of water is a million times lower for the visible region of light than the rest of spectrum, a property which enables passage of the useful and prevention of the harmful rays from the sun, and makes the earth amenable to the accommodation of biological life. Furthermore, the greenhouse effect which keeps the Earth’s climate at moderation also stems from this aspect of water. Because the sunlight that is reflected from the Earth is mostly in the infrared region, it is effectively absorbed by the water vapor in the atmosphere due to water’s higher absorption of light within the non-visible regimes, and hence the heat does not escape from the earth.</p>
<p>Water is one if the best solvents, which is very important for cleansing. Finally (and thankfully), water does not display its peculiarity when it comes to taste. Such a “famously odd” molecule is somewhat ironically tasteless and odorless, and extremely easy to drink and consume.</p>
<blockquote>
<p>“If We so willed, We would make it bitter and salty. Then should you not give thanks?” Waqi‘ah (56:70)</p>
</blockquote>
<p>Although each of the aforementioned physical aspects of water deserves mentioning in its own right, from here on we will focus on water’s properties from a biological standpoint. To this end, we will first introduce some aspects of water, look at the interaction of water with bio-molecules, and finally elaborate on three particular biological examples (protein folding, cellular membranes and water channels), which demonstrate how such interactions provide the bases for life.</p>
<h3><b>Life based on water</b></h3>
<blockquote>
<p>“We made every living thing from water.” Anbiya 21:30</p>
</blockquote>
<p>Thanks to its abundance on earth, water is easily accessible and inexpensive. However, in the summer of 1986, Professor Michael Levitt of Stanford University spent almost half a million dollars on a tiny amount of water, that would hardly wet the point of a pin. Certainly, the money was not spent on the water itself, but the expenditure (it now costs about 50 cents to run such a simulation) reflected the cost of running a simulation on a cluster of supercomputers for two weeks to understand the interaction between water molecules and a particular protein. Eventually, the money turned out to be well spent. Although the same protein had been modeled before by a research group at Harvard University in 1977, the simulation had been carried out as if the protein were in a vacuum. Levitt and his co-workers realized that the previous attempt to model the proteins in the absence of water was a poor predictor of the real-life scenario. Likewise, earlier DNA simulations meant to model the double helical DNA in the absence of water had failed, Levitt and his colleagues also succeeded in simulating the DNA by adding water in the environment, and the water molecules were found to be interacting with nearly every part of the DNA. Levitt’s groundbreaking discoveries not only revealed the importance of the interaction between water and biological molecules, but also paved the way for computational biologists to simulate biological entities in the presence of their native watery media.</p>
<p>When a drop of oil is placed in water, it does not mix with water. Hence, oil and water are said to be immiscible. In contrast, sugar easily dissolves in water and forms a homogenous mixture upon mixing. Although not as obvious at first sight, the underlying principles which govern this phenomenon can explain how water can interact with biological molecules.</p>
<p>Materials can be classified according to their “water tendency”: the ones that tend to avoid water (e.g. oil), are considered hydro-phobic (hydro: “water,” phobic: “fearing”), whereas materials that mix well with water (e.g. alcohol) are called hydro-philic (or water-loving). Water’s particular molecular structure turns out to yield a non-uniform electron distribution, and thus makes water molecule highly “polar” (see Figure 1.a). As a consequence, polar or charged molecules prefer being close to water molecules, whereas the apolar or neutral ones tend to avoid them.</p>
<p>Many curious aspects of water stem from another fact-that water molecules can interact with each other through “hydrogen bonding” (see Figure 1b). Although the molecules in a liquid are highly disordered, hydrogen bonding gives water molecules some order even in the liquid phase. A molecule’s ability to cooperate in hydrogen bonding is very important for breaking (or formation) of hydrogen bonds, and affect two parameters (i.e. the “order” and the “energy”) of the system which determine the feasibility of a certain chemical reaction.</p>
<p>Actually, most, if not all, of the oddities of water are due to these two properties (water-tendency and hydrogen bonding). Furthermore, these two aspects determine a great deal of how water interacts with other molecules, and the way water enables the proliferation of life. We will now elaborate on some biological phenomena and try to understand them in the light of these aspects of water.</p>
<h3><b>Protein folding</b></h3>
<p>Proteins are biological molecules that carry out the vital tasks of life. In the cell, proteins are initially synthesized as linear chains of amino acids ranging in size from a few to several thousand amino acids in length. Subsequent to synthesis, a linear chain spontaneously folds into a particular three-dimensional (3D) form (see Figure 2). This precise fold is essential for the execution of protein’s specific function (see Figure 3). As simple as it may sound, protein folding is currently one of the biggest questions in biophysics.</p>
<p>Researchers are working hard to be able to devise principles to estimate which 3D fold a certain linear amino acid sequence adopts, and what functions the eventual 3D structures execute. Although these questions related to the protein folding phenomenon are still far from being totally understood, some clues have been discovered.</p>
<p>In 1969 Cryus Levinthal stated that an average size protein would fold within about 1030 times longer than the expected lifetime of the universe if it were to fold via sampling all possible conformations even if the conformational sampling is very fast (e.g. a millionth of a millionth of a second for each conformation). This obviously is not what happens in reality, and the experimentally observed folding times are within milliseconds (a thousandth of a second) – second regime. This discrepancy between the estimated and the measured timescales is referred to as the “Levinthal Paradox.”</p>
<p>Consequently, proteins cannot rely on randomly sampling all the possible conformations to fold, but the folding must rather be a driven and directed process. Scientists hypothesize that water comes to the rescue at this point. As the linear protein chain is being synthesized, water-hating amino acids try to bury themselves away from water as soon as possible. This leads to the rapid collapse of the linear amino acid chain into a compact structure where hydrophobic regions are protected from water (see Figure 2c). This initial compaction which is provided by the interaction with the ambient aqueous medium is thought to be the key step in achieving folding within reasonable timescales. After the first rapid compaction, the protein adapts its final structure by sampling a much smaller number of possible conformations.</p>
<p>Simultaneously, hydrogen bonding helps the stabilization of certain folds with respect to other possible structures and contributes to the folding process. Eventually, the functional 3D fold is thus realized from the nascent linear protein chain.</p>
<h3><b>Cellular compartmentalization </b></h3>
<blockquote>
<p>“He has let flow forth the two large bodies of water, they meet together, (but) between them is a barrier, which they do not transgress (and so they do not merge).” (Rahman 55:19-20)</p>
</blockquote>
<p>Compartmentalization is an important feature of life. First of all, the boundary of a cell must be well-defined and well-controlled. Secondly, different tasks are carried out by specialized compartments (so called organelles) within most of the cells. The major design principle of the cellular boundaries depends on the immiscibility of water and oil. The subunits of cellular membranes are “lipids” which simply are oil-based molecules. A lipid molecule has two parts: A water-loving “headgroup” and two water-fearing “tails”. Because of the dual water-tendency of lipids, they can self assemble into bi-layers (see Figure 4 a and b), which eventually form enclosed structures. Thanks to the properties of water, this compartmentalization is readily achieved.</p>
<p>The cell membrane thus formed is impermeable to ions, and many chemical agents important for sustaining the cellular functions. Although such a barrier is essential for holding the cell contents as well as maintaining intracellular balance, material exchange between inside and outside of the cell is also an indispensible trait for carrying out the vast majority of vital processes (nerve impulse formation and transmission, cell signaling, nutrition, etc.). In order to achieve well-controlled material transport across the membrane, the cell membrane is decorated with various proteins that function as “channels” (see Figure 4c). These channel proteins come in different flavors and show specificity towards different chemicals. For instance, the channel protein for the potassium ion (K+) only allows the passage of potassium ions, whereas the sodium channel only lets sodium (Na+) through. Other channels have “gating” mechanisms that enable the channel to be “open” or “closed” depending on the need for the transport to happen. Although the specificity and gating mechanism of every channel protein relies on a unique ingenious design principle which deserves detailed mention in its own right, in the rest of the article we will focus on the water channel, for it once again exemplifies the perfect harmony between water and the bio-molecules.</p>
<h3><b>Aquaporin: The water channel</b></h3>
<p>Almost 170 liters of water is recycled in the human kidney on a daily basis, and this requires that kidney tissue possesses high water permeability. Since water cannot diffuse in and out of the cell membrane very rapidly for the reasons given above, reconciliation of the enormous daily flux of water in the kidneys has been a long-standing puzzle. The discovery of water channels (also known as “aquaporin”) by Peter Agre in 1992 resolved the mystery, and this finding was awarded the Nobel Prize in Chemistry in 2003. It is now known that the recycling machinery in the kidney chiefly consists of millions of aquaporins. Like other channel proteins, aquaporins also display selectivity: water is effectively transported across aquaporins, whereas the passage of other ions and miscellaneous agents is not permitted.</p>
<p>However, how this selectivity is achieved presented another riddle: Hydrogen is smaller than water and can move through the smallest opening. How, then, is the hydrogen selected against, while water is allowed? It was also well known that water molecules which are ordered within the channel constriction (see Figure 5) normally form a “proton wire” through which the hydrogen ions (i.e. protons) can easily flow just like an electrical current flows along an electrical wire. Thus, as water is transported across aquaporins, hydrogen ions should in principle move rapidly in and out of the cells through the chain of ordered water molecules (i.e. the proton wire) in an uncontrollable manner. This would cause an imbalance in the cellular environment, and most likely would lead to cell death.</p>
<p>The answer came from a computer simulation of aquaporin by Emad Tajkhorshid and Klaus Schulten at the University of Illinois at Urbana Champaign. They found that the water molecules change their orientation (see Figure 5) as they spun through the water channel. This rotation was achieved via water molecules’ specific interactions with the amino acid residues in the channel. Thanks to this orientation, the formation of the proton wire is disrupted (just like a break in an electric circuit) and the hydrogen ions are not permitted through the channel, while rapid water diffusion takes place. The interaction between water and aquaporin thus provides just another reason water is rightfully considered the cradle of life.</p>
<h3><b>Conclusion</b></h3>
<p><em>&#8220;There are only two ways to live your life. One is as though nothing is a miracle. The other is as though everything is a miracle.&#8221; Albert Einstein</em></p>
<p>… and that He sends down water from the sky, and revives with it the earth after its death. Surely in this are signs for people who will reason and understand. Rum 30:24 </p>
<h3><b>References</b></h3>
<p>1. Gedik, N. “The Miracles of Water,” The Fountain, Issue 43, January–March 2005.</p>
<p>2. Ileri, R. “Water and Vitality,” The Fountain, Issue 2, April-June 1993.</p>
<p>3. Unal, Ali. The Qur’an: An Annotated Interpretation in Modern English, The Light, Inc. NJ: 2005.</p>
<p>4. “Simulating Water and The Molecules of Life,” Scientific American, November 1998.</p>
<p>5. Errington, J. R. &amp; Debenedetti, “P.G.” Nature, 409, 318–321, 2001.</p>
<p>6. Water, Wikipedia.</p>
<p>7. “Mysteries of Water,” Physics Today, June 2003.</p>
<p>8. Sener, Hamdi. “Mikroalemdeki Canli Motorlar” (Living Engines in the Micro World), Sizinti, September 2005.</p>
<p>9. Figures are modified from: Chemical polarity, Wikipedia<br />Hydrogen bond, Wikipedia<br /><a href="http://www.ccl.net/cca/documents/dyoung/water/">http://www.ccl.net/cca/documents/dyoung/water/</a><br /><a href="http://www.helsinki.fi/~jtvaara/images/water.gif">http://www.helsinki.fi/~jtvaara/images/water.gif</a><br />“Inner Life of The Cell” animation, <a href="http://multimedia.mcb.harvard.edu/">http://multimedia.mcb.harvard.edu/</a><br />“Molecular Biology of the Cell,” 4th Edition; Bruce Alberts et al.<br /><a href="http://cache.eb.com/eb/image?id=53074&amp;rendTypeId=4">http://cache.eb.com/eb/image?id=53074&amp;rendTypeId=4</a><br />http://www.mja.com.au/public/issues/179_11_011203/van10722_fm-5.jpg</p>
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		<title>The Newly Discovered Dimension of The Heart</title>
		<link>https://fountainmagazine.com/all-issues/2005/issue-50-april-june-2005/the-newly-discovered-dimension-of-the-heart/</link>
		
		<dc:creator><![CDATA[Louima Cunningham]]></dc:creator>
		<pubDate>Fri, 01 Apr 2005 00:00:00 +0000</pubDate>
				<category><![CDATA[Issue 50 (April - June 2005)]]></category>
		<category><![CDATA[biological]]></category>
		<category><![CDATA[body]]></category>
		<category><![CDATA[brain]]></category>
		<category><![CDATA[carried]]></category>
		<category><![CDATA[children]]></category>
		<category><![CDATA[development]]></category>
		<category><![CDATA[Education]]></category>
		<category><![CDATA[electrical]]></category>
		<category><![CDATA[emotional]]></category>
		<category><![CDATA[emotions]]></category>
		<category><![CDATA[Health & Medicine]]></category>
		<category><![CDATA[heart]]></category>
		<category><![CDATA[hrv]]></category>
		<category><![CDATA[human]]></category>
		<category><![CDATA[positive]]></category>
		<category><![CDATA[produced]]></category>
		<category><![CDATA[rate]]></category>
		<category><![CDATA[research]]></category>
		<category><![CDATA[shows]]></category>
		<category><![CDATA[Spiritual]]></category>
		<category><![CDATA[system]]></category>
		<guid isPermaLink="false">http://107.21.79.195/all-issues/2005/issue-50-april-june-2005/the-newly-discovered-dimension-of-the-heart/</guid>

					<description><![CDATA[In our world of knowledge and wisdom, there are two meanings for the word “heart”; as an emotion that is open to the spiritual realms and an important power plant for the biological structure. Our Lord, Who has created everything in pairs, has created the heart as a dual structure too, as both the material [&#8230;]]]></description>
										<content:encoded><![CDATA[<p>In our world of knowledge and wisdom, there are two meanings for the word “heart”; as an emotion that is open to the spiritual realms and an important power plant for the biological structure. Our Lord, Who has created everything in pairs, has created the heart as a dual structure too, as both the material and the spiritual heart. The spiritual heart is a spiritual gift; the spiritual soul is the essence and hidden depth of this gift and the biological soul is its transport. The biological heart is one of the three centers (the head, the heart, and the abdomen) of the biological soul, like the brain. The heart is a two-sided core lit with divine light; with one aspect it looks upon the realm of souls and with the other the realm of objects. When we look at it from this point of view, we see that the material and spiritual hearts are related to one another. But since the content and nature of the relationship between these two hearts has not yet been fully revealed, it is still open for research. Below, we summarize the latest research that indicates the fact that the unity of heart and mind, a unity that is a potential in all human beings, needing to be cultivated, a unity which has to be realized on the way to truth, can in fact be observed within the physical structure of human beings.</p>
<p>Modern medicine, which tries to understand the biological structure of human beings, has been carrying out research in recent years that reveals the manifestations of the above fact. For instance, in classical text books the heart is introduced as a mechanical system that pumps the blood, a center to which all the organs of the body are directed; but recent research shows that there is a nerve system in the heart, just as there is in the brain, and that the heart assumes responsibility, to the same degree as the brain, in the control of the body. It has been revealed that the harmonious functioning of all the other bodily systems is regulated by the heart to the same degree as done by the brain. In recent years, the heart has been depicted as the sage and master of the palace that is the body. Alongside the abstract, analytical, and logical intellect of the brain, the heart is equipped with emotional and communicational intellect. Emotions are first produced in the heart; the signals produced in the heart are then carried very rapidly over to the limbic system of the brain. It is then through the brain that the emotional response is carried over to the body and communicated to those around it. Research which has been carried out in the framework of studying the heart-brain relationship has revealed things that may change our attitude toward the heart, as well as affecting our presuppositions about humanity and how our health can be protected.</p>
<p>The two-way communication system that exists between our heart and brain is one of the most complex communication systems in the world. For a start, the heart is made up of 40,000 nerve cells which pertain to it alone. This number of nerve cells is close to the average found in various centers of the brain. It has a complex and mysterious nervous system unto itself and this nervous system is defined as the “brain in the heart.” There is clear and sound proof that the heart communicates with the brain along four different pathways. The first is via the nerves (the neurological pathway); the second through the hormones and neurotransmitters (the biochemical pathway); the third is made up of the pulse waves created by blood pressure (the biophysical pathway); with the fourth being the interaction of the electromagnetic fields (the energy pathway). The sympathetic nerves that envelope the heart like a web are one of the four important communication and regulation branches of the heart-circulation system. The heart operates in a system which produces one of the most powerful and broadest electromagnetic fields in the human body. The bioelectromagnetic fields that are produced can be measured by SQUID (Superconductor Quantum Interference Device) from 50-70 cm away. The electrical field in the heart measured by an electrocardiogram (ECG) is on average 60 times greater in amplitude than the electrocephalogram measurements taken from the brain; the magnetic component of the heart is 5,000 times stronger than the one in the brain. Consequently, these forces cannot be absorbed by the tissues and disappear; similarly the blood pressure that is produced by the rhythmic activity of the heart, the sound pressure, and the changes in the electromagnetic waves are not only carried over to each part of the body, but at the same time the scattering of that field of energy is felt by the people who are experiencing it. All these observations show that the heart has been given the role of a signal station, providing and regulating the synchronicity within the entire body. When people experience different emotions (fury, happiness, fear, and despair) the heart beat changes along with the rhythmic patterns produced by the pulse (Figure l and 2). </p>
<h3><b>The Emotional State of the Heart Affects the People around</b></h3>
<p>The quality of the electrical signals that emanate from the heart affect all the cells of the body in a negative or positive way. It has been observed that the electromagnetic fields produced in the heart affect the emotions and thoughts of other people who are in physical contact or 50-70 cm away from a heart that is producing these emotions (Figure 3).</p>
<p>This shows that the emotional state of educators in preschool environments and mothers has a direct effect on the development (especially that of heart and mind) of the children. In particular, if the people who work in preschool environments are under stress, temperamental, unhappy, or depressed, this will not only affect the educator, but also the development of the children under their care. When those who are working with children have positive emotions, are affectionate, and smile, this has a positive effect on the development and learning curve of children.</p>
<p>The development of the brain and heart in children is dependent on their mothers and educators having a healthy heart. For these hearts to be healthy they have to possess positive emotions (such as affection, compassion, and love). In one study carried out at Harvard University, it was observed that adults who had not received sufficient amounts of love during their childhood or who received no affection became ill more frequently and also died sooner. It is now understood that the general heath of human beings is more dependent on our living with positive emotions and having a strong spiritual dimension than on living with logical and rational thoughts. From these we understand much better the importance of controlling the emotions that emanate from the heart through a sound education. The heart is one of the centers that regulates the general health of the individual. Behavior patterns (overworking, the performing of hasty actions, anxiety, or being temperamental) are risk factors that deteriorate the health of the heart and that can lead to heart attacks. Some research shows that an intense episode of negative emotions, like fury, anxiety, or despair over a long duration can lead to sudden death related to heart disease. The risk of stress that is related to poorly managed chronic negative emotions causing cancer and heart disease is six times greater than the risk involved in smoking, high cholesterol, and hypertension. Disliking or being unsatisfied with the work that one does is also considered to be a great risk factor when it comes to heart attacks.</p>
<h3><b>The Heart Rate Variability</b></h3>
<p>According to messages emanating from the sympathetic nerves in the autonomous nervous system, one of the four pathways used in the control and regulation of heart activity, the heart rate and secretion of adrenal hormones increase. The stimuli that come from the parasympathetic nerves, on the other hand, slow down the beating of the heart. The balance and harmony between the two is very important for the health of the heart. The changes that are observed in pulse patterns over time are a key measure of the balance between the brain and the heart. Heart rate variability (HRV) shows whether or not the electrical stimuli in the sinoatrial knot (the group of nerve cells that are responsible for the production of the electrical current in the heart) are being regulated as they should. Since the HRV parameter forms a window through which we can measure the ability of the heart to respond to the regulating signals that travel from the heart to the brain and from the brain to the heart; in recent years the determination of the percentage of heart rate variance has gained importance. The HRV measurements are carried out via tacograms; these measure and analyze the HRV for the duration of an hour. Normally, the HRV parameter is the capacity of the heart rate to respond to changing circumstances and to adapt to the required pace. The decrease and increase in this capacity in situations such as stress, temper, excessive joy, and panic disturbs the capability of the heart to adapt; it causes a decrease in this capability and can result in the collapse of the whole system. An HRV which has decreased, due to either material or emotional causes, could be a harbinger of arrhythmic cardiac arrest, myocardial infarction, the speeding up of atherosclerosis, or heart failure. Patients whose HRV decreases may die sooner than patients whose HRV is normal or high. If the HRV does not keep within the normal, balanced limits, it is highly probable that those patients may die due to a sudden heart attack.</p>
<p>In the biological working of the body, the brain obeys the heart. When the changes in the heart rate are harmonious, the waves (alfa or lower wavelengths) that are produced in the person’s brain are also in synch with the rhythm of the heart. In other words, there is a harmonious cooperation and an excellent unity in the compatibility of heart beats and the relationship between the heart and the brain. The research that has been done in this field shows that the activity of the brain has been programmed in synch with the activity of the heart. For instance, in embryonic development, the brain follows the heart. While the child is developing in the womb, the heart develops before the brain. The development of the brain is completed only after a child reaches one year of age. According to recent research, when a person’s emotions change, the quality of the signals that emanate from the heart to the brain change automatically as well. In other words, if the psycho-physiological state of the individual is balanced and positive, the HRV rhythms of the heart are accordingly harmonious and consequently the electrical activity in the brain is synchronized with this balance and harmony that is produced in the heart.</p>
<p>Research shows that humans live 80-90 percent of their lives automatically and mechanically; in their daily lives they make most of their decisions and do most of their activities unconsciously, according to habit and subconscious directives. Consciousness and will have a very weak hold on our emotions, whereas our strong emotions (for instance passion) have a greater capacity to control and direct our will and consciousness. The automatic way of life conducted through habit is dominant over the way of life led through conscious choices and will; emotions (especially passions) have, in that sense, a natural superiority over reason and logic. This natural condition and tendency of humanity makes it essential to find the answer to the question of how one may live a life that is governed by reason, logic, and will, yet maintain health at an optimal level. The key to finding the answer to this question is to take the education of the heart (or the education of “emotional reason”) seriously and giving it priority. Education which does not take emotion or passion into account, which overlooks them, has to be abandoned immediately. In its place, an education and life philosophy that gives due importance to the heart and the emotions, a philosophy where reason and logic help emotions and show them the way must be adopted.</p>
<h3><b>References </b></h3>
<ul>
<li>Gulen, M.F., Key Concepts in the Practice of Sufism, The Light, Inc., NJ: 2004.</li>
<li>McCraty, R., M. Atkinson, D. Tomasino, Science of The Heart, Institute of HeartMath, California: 2001.</li>
<li>http://www.futurehealth.org/Freezeframe.htm</li>
<li>http://www.heartmath.org.</li>
</ul>
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		<item>
		<title>Biological Effects of Cellular Phones</title>
		<link>https://fountainmagazine.com/all-issues/2002/issue-37-january-march-2002/biological-effects-of-cellular-phones/</link>
		
		<dc:creator><![CDATA[Louima Cunningham]]></dc:creator>
		<pubDate>Tue, 01 Jan 2002 00:00:00 +0000</pubDate>
				<category><![CDATA[Issue 37 (January - March 2002)]]></category>
		<category><![CDATA[biological]]></category>
		<category><![CDATA[cancer]]></category>
		<category><![CDATA[cell]]></category>
		<category><![CDATA[Cell phones]]></category>
		<category><![CDATA[cellular]]></category>
		<category><![CDATA[energy]]></category>
		<category><![CDATA[exposure]]></category>
		<category><![CDATA[frequency]]></category>
		<category><![CDATA[health]]></category>
		<category><![CDATA[Health & Medicine]]></category>
		<category><![CDATA[mhz]]></category>
		<category><![CDATA[people]]></category>
		<category><![CDATA[phones]]></category>
		<category><![CDATA[power]]></category>
		<category><![CDATA[radiation]]></category>
		<category><![CDATA[research]]></category>
		<category><![CDATA[sar]]></category>
		<category><![CDATA[spectrum]]></category>
		<category><![CDATA[studies]]></category>
		<category><![CDATA[tissue]]></category>
		<category><![CDATA[uhf]]></category>
		<category><![CDATA[wave]]></category>
		<guid isPermaLink="false">http://107.21.79.195/all-issues/2002/issue-37-january-march-2002/biological-effects-of-cellular-phones/</guid>

					<description><![CDATA[Cellular phones have become one of the 21st century&#8217;s most indispensable tools. They serve a wide range of benefits, from being the fastest way to communicate to saving somebody&#8217;s life. Now people are trying to design cell phones that will let us control home appliances remotely and even to access the Internet. But, some are [&#8230;]]]></description>
										<content:encoded><![CDATA[<p>Cellular phones have become one of the 21st century&#8217;s most indispensable tools. They serve a wide range of benefits, from being the fastest way to communicate to saving somebody&#8217;s life. Now people are trying to design cell phones that will let us control home appliances remotely and even to access the Internet. But, some are asking, are they safe to use? Actually, there are good reasons to be concerned, for people using cell phones too often are radiating radio frequency (RF) energy to their heads.</p>
<p>In today&#8217;s cellular communication systems, cellular phones operate in several frequency bands. European systems use the Global System for Mobile Communications (GSM) at around 900 MHz and 1800 MHz; American systems use 850 MHz and 1900 MHz, frequencies that fall between the operating frequency ranges of televisions and microwaves. This frequency range is called non-ionizing, for the wave&#8217;s energy does not release electrons from atoms in living tissue. For instance, an X-ray is an ionizing wave that, to a degree, damages exposed biological material. Therefore, most concerns deal with RF energy&#8217;s heating effect rather than with ionization.</p>
<h3><b>Technical Motivation</b></h3>
<p>The electromagnetic spectrum extends from DC (direct current) to ionizing radiation. Scientists divide this spectrum into subregions. Cellular phones fall into the ultra-high frequency (UHF) regime, specifically from 300 MHz to 3000 MHz. By itself, a continuous UHF wave carries no information and does not enhance communication. It only becomes useful when modulation, defined as means carrying the information on a high frequency carrier, like UHF, is applied. The most common modulation techniques are amplitude modulation (AM) and frequency modulation (FM).</p>
<p>The capacity of the spectrum&#8217;s given section to carry information is limited by the Shannon Theorem. According to this theorem, channel capacity can be increased by increasing the system&#8217;s signal-to-noise ratio. In wired communications, channel capacity can be increased by adding more parallel optical fibers. Channel capacity in wireless communications can be increased by transmitting weak signals that attenuate rapidly near the transmitter and thus provide a given portion of the electromagnetic spectrum to be utilized many times. How a given spectrum is allocated among users affects the channel capacity. Therefore, there are several coding techniques, the most common of which are Frequency Division Multiple Access (FDMA), Time Division Multiple Access (TDMA), and Code Division Multiple Access (CDMA).</p>
<p>Neglecting some small details, an electromagnetic (EM) wave&#8217;s energy is expressed in terms of power density (W/m2) across a surface. Power density measures an incident EM wave&#8217;s strength. Easily measured, it is a very preferable metric to UHF fields. For uncontrolled environments, the American National Standards Institute and the Institute of Electrical and Electronics Engineers (ANSI/IEEE C95.1) recommend a 2 to 20 W/m2 for an average external exposure to UHF. The International Commission on Non-Ionizing Radiation Protection (ICNIRP) has similar power density recommendations for limiting the general public&#8217;s exposure to RF energy so that people will not be overheated by RF energy. As a comparison, for example, summer sunshine peaks around 1000 W/m2.</p>
<p>However, as power density is not a good indicator inside a living organism, scientists have defined a Specific Absorption Rate: SAR (in W/kg). For uncontrolled environments, ANSI/IEEE limits the spatial-average SAR to 0.08 W/kg whole body and to 1.6 W/kg averaged over any 1 gram of tissue. Also, 1998 ICNIRP restrictions are similar to ANSI/IEEE&#8217;s. The SAR can be estimated in three ways.</p>
<p>&#8211; Micro-antenna: Small antennas can determine a tissue&#8217;s electric field as well as its SAR. But it is difficult to place the antenna, and the tissue&#8217;s properties may not be known.</p>
<p>&#8211; Miniature thermal probes: Since RF energy heats the tissue, this technique detects the heat and the SAR in the neighborhood of the temperature cell, which then can be computed accordingly. However, this method also seems very difficult technologically.</p>
<p>&#8211; Numerical modeling: The numerical modeling of macroscopic bodies enables a numerical simulation, known as the Finite Difference Time Domain (FDTD), that can estimate the SAR. However, this process can be time-consuming and expensive.</p>
<h3><b>Possible Health Issues</b></h3>
<p>An EM wave can effect a biological change in living tissue in two ways: Depositing enough energy while passing through the biological material to alter some structures, or depositing packets of energy larger than the bond energy. Yet neither way seems to be possible, for the photon energy within the UHF zone is far less than the bond energy or the energy required to alter a living tissue&#8217;s structures. Therefore, many scientists now argue that UHF radiation at subthermal power levels can cause some biological damage.</p>
<p>Due to relatively low exposure levels, relatively small populations, and a lack of reliable dose estimates, proving or disproving the existence of RF exposure&#8217;s biological hazards remains an issue for epidemiology (e.g., statistical analysis of health records and animal studies).</p>
<h3><b>Epidemiological Studies</b></h3>
<p>Epidemiological studies were conducted among people who worked in a high frequency environment, such as radar stations. Search criteria were not limited to cellular and personnel communication system (PCS) frequencies. Due to the nature of radar and other military equipment, broader frequency ranges were covered. The epidemiology of cancer and RF radiation includes studies of cancer mortality rates among those exposed to RF energy.</p>
<p>Throughout these studies, people&#8217;s records were searched to determine if their cancer was due to RF exposure. These studies were made in various institutions, including the Radar Laboratory of the Massachusetts Institute of Technology, the U.S. Navy and Air Force, and the Polish military. There was no conclusive evidence that RF exposure increases the risk of cancer. Also, due to the lack of comparisons with total cancer, it was suggested that RF exposure does not have a strong effect on cancer.</p>
<p>Since brain cancer takes a long time to develop and epidemiological studies tell nothing about future risks, these studies have not proved or disproved that RF exposure increases the risk of cancer.</p>
<h3><b>Animal Studies</b></h3>
<p>Animals are the other source of information that potentially may answer people&#8217;s concerns. Experiments have studied rats exposed to certain power levels of RF energy. However, these studies found no link between cell phones and cancer.</p>
<p>In 1999, a Motorola-funded research program concluded that exposing rats to pulse-modulated 837 MHz RF energy, very close to that radiated by a digital cell phone, does not cause or develop brain cancer. A study in April 2000 reported that this conclusion is valid for continuous-wave RF (analog cell phones). But a 1995 study at the University of Washington (Seattle) reported that exposing rats to RF radiation at an average whole-body exposure of 1 W/kg of body weight caused breaks in their brain cells&#8217; DNA, which is an indication of cancer. No other study has confirmed this finding.</p>
<p>Other studies have focused on different aspects of RF radiation rather than brain cancer. They searched animals for certain diseases and noticed an increase in disease rate. However, despite such research findings, animal studies seem to be far removed from human health.</p>
<h3><b>Conclusion</b></h3>
<p>Epidemiological findings and animal studies have neither proved nor disproved the health hazards of mobile phones. A February 2000 essay by the U.S. Food and Drug Administration (FDA) stated that: There is currently insufficient scientific basis for concluding either that wireless communication technologies are safe or that they pose a health risk to millions of users. Research activity continues. For example, France&#8217;s International Agency for Research on Cancer has received a research project of 8 million euros from the European Commission for a 3-year, wide epidemiological study. Also, the FDA and the Cellular Telephone Industry Association have undertaken a $1 million research project to clarify the health risks of mobile phones.</p>
<p>Meanwhile, some researchers are trying to find the head&#8217;s SAR by using electromagnetic simulations (FDTD). So far, they have discovered that it is strongly affected by the cell phone&#8217;s position as well as the head&#8217;s shape and properties. Therefore phone-makers are trying to design handset designs to reduce the SAR. However, it seems that the debate will remain until scientific proof is confirmed and made available.</p>
<ul>
<li><em><b>References</b></em></li>
<li>http://www.fda.gov/cdrh/ocd/mobilphone.html.</li>
<li>IEEE Spectrum. Are Mobile Phones Safe? (August 2000): 23-28.</li>
<li>Moulder et. al. Cell Phones and Cancer: What is the Evidence for a Connection? Radiation Research Society, 151 (1999): 513-31.</li>
</ul>
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		<item>
		<title>Biological Warfare</title>
		<link>https://fountainmagazine.com/all-issues/2001/issue-36-october-december-2001/biological-warfare/</link>
		
		<dc:creator><![CDATA[Louima Cunningham]]></dc:creator>
		<pubDate>Mon, 01 Oct 2001 00:00:00 +0000</pubDate>
				<category><![CDATA[Issue 36 (October - December 2001)]]></category>
		<category><![CDATA[agents]]></category>
		<category><![CDATA[anthrax]]></category>
		<category><![CDATA[attack]]></category>
		<category><![CDATA[biological]]></category>
		<category><![CDATA[chemical]]></category>
		<category><![CDATA[defense]]></category>
		<category><![CDATA[iraq]]></category>
		<category><![CDATA[nuclear]]></category>
		<category><![CDATA[online]]></category>
		<category><![CDATA[people]]></category>
		<category><![CDATA[production]]></category>
		<category><![CDATA[program]]></category>
		<category><![CDATA[Science]]></category>
		<category><![CDATA[terrorism]]></category>
		<category><![CDATA[warfare]]></category>
		<category><![CDATA[weapons]]></category>
		<guid isPermaLink="false">http://107.21.79.195/all-issues/2001/issue-36-october-december-2001/biological-warfare/</guid>

					<description><![CDATA[Biological warfare used to be the stuff of movies (The Andromeda Strain [1971], Outbreak [1995], 12 Monkeys [1996], Mission Impossible 2 [2000]) and books (The Coming Plague [1995], The Hot Zone [1995], The Cobra Event [1998], Rainbow Six [1999]). But during the Gulf War (1990-91), the U.S. considered it real enough to vaccinate its soldiers [&#8230;]]]></description>
										<content:encoded><![CDATA[<p>Biological warfare used to be the stuff of movies (The Andromeda Strain [1971], Outbreak [1995], 12 Monkeys [1996], Mission Impossible 2 [2000]) and books (The Coming Plague [1995], The Hot Zone [1995], The Cobra Event [1998], Rainbow Six [1999]). But during the Gulf War (1990-91), the U.S. considered it real enough to vaccinate its soldiers against an anthrax-based biological weapon produced by Iraqi scientists.1</p>
<p>Biological weapons (BWs), defined as infectious bacterial or viral agents used to harm others, have a long history2: Primitive peoples used arrows poisoned with biological toxins from animal and plant extracts, and also poisoned their enemy’s water supply with fecal extracts. Medieval warriors besieging the Russian city of Kaffa catapulted plague-infected corpses over its walls. Europeans knowingly gave smallpox- or measles-infected blankets to Native Americans, who had no resistance to these diseases. BWs reportedly were used during WWII. Over time, BWs have come to include biologically derived toxins and poisons.3 Among the most dangerous agents are smallpox, botalinum toxin (Btx), anthrax, and ricin.4 Some are highly lethal, while others incapacitate the host or primarily harm animals and plants. Today, many countries are believed to fund such research.</p>
<h3><b>BWs Become a Modern Issue</b></h3>
<p>Japan started the first offensive biological weapon program in 1918 with Unit 731, a special army unit dedicated to BWs production and experimentation. In 1931, it moved to Man-churia, China, where it conducted experiments on Chinese people and actually attacked several cities with different BWs until 1942. At least 10,000 Chinese died during those experiments. In 1942, the U.S. learned of this program and started its own. By 1969, it had weaponized the agents causing anthrax, botulism, tularemia, brucellosis, Venezuelan equine encephalitis, and Q fever.5</p>
<p>In 1969, President Nixon declared that the U.S. unilaterally renounced first use of lethal or incapacitating chemical agents and weapons, and unconditionally renounced all methods of biological warfare. Henceforth, the U.S.’s biological program would research only strictly defined measures of defense, such as immunization. All stockpiles were ordered to be destroyed. The U.S. and 165 other countries have signed the Biolog-ical and Toxic Weapons Convention (BWC), and 144 countries have ratified it.6</p>
<p>But the BWC cannot be effective if it cannot be enforced. For example, the USSR signed it but continued its programs. In 1979, at least 66 people died after an accidental anthrax release from a plant near Sverdlovsk. Soviet authorities denied any BWs production, but years later President Yeltsin confirmed that anthrax was being researched at that time.7 Yeltsin further asserted that all such programs were stopped and that stockpiles were being removed. However, evidence suggests that part of the offensive programs continue.8</p>
<p>The USSR’s demise (1991) led to the spread of BWs production information. According to Margolis, some of the 60,000 scientists and technicians formerly employed by its biological warfare establishment reportedly are working in Iraq, Israel, Iran, Syria, and Serbia, all of which already have extensive arsenals of biowarfare weapons. India also may have received substantial Russian aid.9</p>
<p>Iraq announced its BWs program in 1995. Fortunately, such agents were not used during the Gulf War, possibly due to fear of nuclear retaliation. The UN destroyed whatever it could find of Iraq’s BWs program in 1996.10 China, Iran, Taiwan, Syria, Cuba, North Korea, Egypt, Israel, and Libya are suspected of having similar programs.11</p>
<h3><b>Why Would Anyone Use BWs?</b></h3>
<p>In the eyes of nations or groups that put their own ideology or interests above all other considerations, including human life and future generations, such weapons might appear attractive. Consider the following points:</p>
<p>BWs probably are more effective on a per-quantity basis than more conventional weapons. Just 8 ounces of Type-A botalinum toxin, “the most lethal substance known,” could kill every living creature on Earth.12 One gram of anthrax contains 100 million lethal doses, and a few kilograms can kill as many people as died at Hiroshima.13 Generally speaking, several kilos of a biological agent can have the impact of several tons of nerve gas. BWs are extremely effective because they are highly toxic and are living organisms that multiply in and infect target hosts.</p>
<p>Producing chemical and nuclear weapons requires sophisticated equipment and highly trained personnel; BWs require only a modest level of education and investment. Kathleen C. Bailey, a former assistant director of the U.S. Arms Control and Disarmament Agency, is “absolutely convinced” that a major biological arsenal could be built with $10,000 worth of equipment in a 15&#215;15 ft. room.14</p>
<p>For example:</p>
<p>To infect 1 sq. km., it would cost approximately $2,000 using conventional weapons, $800 using nuclear weapons, $600 using chemical weapons, and $1 using biological weapons. Any nation with a reasonably advanced pharmaceutical and medical industry can mass produce BWs.15</p>
<p>Weaponized anthrax probably could be produced in a small house, apartment or RV for less than $100,000. The program could be run by perhaps less than a dozen technicians with the equivalent of a BS degree led by one supervisor with a Ph.D. The relevant basic knowledge for most biological weapons-grade microbes is freely available, and equipment and chemicals can be obtained from dozens of suppliers.16</p>
<p>A live weapon needs only a small sample for mass production. Some agents exist naturally in the soil or can be ordered from a biotech company. Various researchers have claimed that Saddam Hussein used the latter method to acquire his original anthrax culture.17 BWs are hard are to detect in the production phase, for most bioweapons can be produced in hidden and/or mobile conditions.18 When detected, the place can be quickly cleaned and transformed into an ordinary pharmaceutical research or biology lab. Furthermore, such anti-terrorist sensor systems as metal detectors, x-ray machines, trained dogs, or neutron bombardment cannot detect BWs.19</p>
<p>Damage is confined to people (and possibly other living things), thus leaving infrastructure intact20; the sheer terror caused by such a threat21; ensuing governmental panic22; and the time lag between release and detection makes identification and apprehension very remote.23 But BWs also have certain drawbacks, among them:</p>
<p>The need for effective delivery. Most biological agents infect through inhalation. Too-large particles are caught in the respiratory system; too-small particles are exhaled. To stay in the lungs, the particle should be between 1 and 5 Angstroms. In fact, a BW attempt in Japan failed because the dissemination tool was ineffective.24</p>
<p>Even if disseminated, the desired result is far from certain. Most biological materials, including spores, are destroyed by exposure to ultraviolet light and drying. Agents released in the air may disperse in unexpected ways due to changes in wind patterns. Rain may wash the agents out of the air before they reach their target. Also, BWs can turn around and infect those who released them.</p>
<p>BWs’ live nature is a two-edged sword. The disease spreads easily, but no one can know when it is safe to live in the infected area. An agent’s lifespan is a major concern, for it can become part of the local microflora and thus threaten any military follow-up activities for an unknown length of time.25</p>
<h3><b>Vulnerability to Attack</b></h3>
<p>BWs have two main uses: on the battlefield and on a civilian population. Battlefield Use: BWs have several drawbacks here, such as high dependence upon external conditions, delayed effects, possible self-infection, uncertainty over when an infected area is safe enough to return to, and neutralization by vaccination or protective clothing. Use on a Civilian Population: This is the true horror, for civilians would not be prepared for such an attack and the resulting epidemic would be very hard to control. If the attack is covert, authorities would be unable to identify the source and unaware of the attack until infected people start showing up in the hospitals. When they finally identified the agent, the infection would be widespread. If a vaccine did not exist, health professionals would be unable to offer much help. The U.S. considers itself very vulnerable to such an attack and is working to protect itself.</p>
<p>Given that BWs are not hard to obtain, why have they not been used on civilian populations so far? The main reasons seem to be fear of a reprisal attack and of alienating the public to one’s cause. Potential users apparently feel that the disadvantages far outweigh the advantages. But as they may not always feel that way, the U.S. and other nations are studying how to prepare their national health care infrastructures and personnel to deal with such an event.</p>
<h3><b>A Recent Development</b></h3>
<p>On July 26, 2001, the Washington Post announced that the U.S. would withdraw from the BWC on the grounds that a newly proposed protocol “would not prevent cheating, and could encourage espionage against the U.S. pharmaceutical and chemical industries.” One wonders if other countries will follow suit.</p>
<h3><b>Conclusion</b></h3>
<p>Many Web sites discuss this vital issue, such as: www.brad.ac.uk/acad/sbtwc/: strengthening the BWC; www.cbiac.apgea.army.mil/about_us/general.html: Department of Defense focal point for data related to Chemical Warfare/Chemical and Biological Defense technology; www.asanltr.com/: specializes in nuclear, biological, and chemical defense and protection issues; www.geocities.com/nbclinks/: gateway for nuclear, biological, and chemical warfare data on the Web; and www.seanet.com/~gtate/cwoff.htm: gives access to various chemical warfare-related Web pages.</p>
<p>All religions condemn such horrific weapons on the grounds that all life is inherently sacred and worthy of respect. However, realpolitik, greed for profits, ideological conflict, and the need to assert or maintain control of natural and other resources deafens many governments and people to the appeals of religion.</p>
<p>Unfortunately, one nation’s and even one group’s decision to head down this path causes others to follow for the sake of self-preservation. We are well-advanced on this path, and no one can say where it will end</p>
<h3><b>Footnotes</b></h3>
<ol>
<li>Rod Hafemeister, “Vaccines Will Not Suffice Fight Vs. Anthrax Needs Other Ammo,” Belleville News-Democrat (28 Dec. 1997). Online at: www.militaryreporter.org/anthrax.html.</li>
<li>R. E. Hurlbert, Microbiology 101, “Chapter XV, Adden-dum: Biological Weapons; Malignant Biology,” Washington State Univ. 1997). Online at: www.slic2.wsu.edu:82/hurlbert/micro101/pages/101biologicalweapons.html.</li>
<li>Henry E. Hardy, “Biological Weapons FAQ v. 0.44,” (1999): Online at: www.ocean.ic.net/ftp/doc/disaster/bio/biowfaq.html.</li>
<li>Partial online list: www.fas.org/nuke/intro/bw/agent.htm.</li>
<li>Thomas W. McGovern and George W. Christopher, Biological Warfare and Its Coetaneous Manifestations. Online at: www.telemedicine.org/BioWar/biologic.htm.</li>
<li>http://projects.sipri.se/cbw/docs/bw-btwc-mainpage.html.</li>
<li>F. A. Abramova et al., “Pathology of inhalational anthrax in 42 cases from the Sverdlovsk outbreak of 1979,” Proc Natl Acad Sci USA, no. 90 (1993): 2291-94; G. W. Christopher et al., “Biological Warfare: A Historical Perspective,” J Am Med Assoc, no. 278 (1997): 412-17.</li>
<li>Eric Margolis, “Another Doomsday Clock Is Ticking, Ticking,” Foreign Correspondent (20 June 1999). Online at: www.foreigncorrespondent.com/ archive/doomsday.htm.</li>
<li>R A. Zilinskas, “Iraq’s biological weapons: The past as future?” J Am Med Assoc, no. 278 (1997): 418-24.</li>
<li>Chemical and Biological Weapons Nonproliferation Project Web Page: www.stimson.org/cwc/bwissues.htm.</li>
<li>Margolis, “Another Doomsday,”(20 June 1999).</li>
<li>Robert H. Kupperman and David M. Smith, “Coping with Biological Terrorism,” in Brad Roberts, ed., Biological Weapons: Weapons of the Future? (Washington: Center for Strategic and International Studies, 1993), 35-46; Wayman C. Mullins, “An Overview and Analysis of Nuclear, Biological, and Chemical Terrorism: The Weapons, Strategies and Solutions to a Growing Problem,” American Journal of Criminal Justice 16:2 (1992): 95-119.</li>
<li>M. Asperilla, “Bioterrorism: The threat of the future.” Online at: www.sun-herald.com/2000/fron9.htm.</li>
<li>L. Cole, “The Specter of Biological Weapons,” Scientific American. Online at: www.sciam.com/1296issue/ 1296cole.html#1.</li>
<li>Ibid.</li>
<li>R. E. Hurlbert, “Biological Weapons: Black Biology,” Focus on Microbiology Education Newsletter (Spring 1998). Online at: www.microbelibrary.org/newsletter/nltrs98.htm.</li>
<li>For this and other claims of how the U.S. helped Iraq obtain the necessary ingredients for both biological and chemical weapons, consult Mark Phythian and Nikos Passas, Arming Iraq: How the U.S. and Britain Secretly Built Saddam’s War Machine (Northeastern Univ. Press: 1996); Alan Friedman, Spider’s Web: The Secret History of How the White House Illegally Armed Iraq (New York : Bantam Books, 1993).</li>
<li>Hurlbert, Microbiology 101 (see footnote 8).</li>
<li>Robert S. Root-Bernstein, “Infectious Terrorism,” Atlantic Monthly (May 1991): 44-50.</li>
<li>Stanley L. Wiener 1991. “Terrorist Use of Biological Weapons.” Terrorism 14:2, (1991): 129; “Chemical and Biological Weapons and Terrorism,” in Susan Flood, ed., International Terrorism: Policy Implications (Chicago: Office of International Criminal Justice, The University of Illinois at Chicago, 1991), 65.</li>
<li>Robert H. Kupperman and Darrell M. Trent, Terrorism: Threat, Reality, Response (Stanford, CA: Hoover Institution Press, 1979).</li>
<li>Harvey J. McGeorge, “Reversing the Trend on Terror,” Defense &amp; Foreign Affairs 16:4 (April 1988): 16-22.</li>
<li>Jeffrey D. Simon, Terrorists and the Potential Use of Biological Weapons: A Discussion of Possibilities R/3771-AFMIC (Santa Monica, CA: RAND Corp., 1989): 10; William E. Burrows and Robert Windrem, Critical Mass: The Dangerous Race for Superweapons in a Fragmenting World (New York: 1994), 483.</li>
<li>The ease of dissemination remains controversial. A detailed summary of the BWs delivery scenarios can be found in Ron Perver, Chemical and Biological Terrorism: The Threat According to the Open Literature. Online at: www.csis-scrs.gc.ca/eng/miscdocs/purv_e.html#tab2.</li>
<li>Dr. Dane Jones. Online at: www.calpoly.edu/~drjones/ biowar-e3.html.</li>
</ol>
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		<title>The Extraordinary Virtues of Mucus</title>
		<link>https://fountainmagazine.com/all-issues/1996/issue-14-april-june-1996/the-extraordinary-virtues-of-mucus/</link>
		
		<dc:creator><![CDATA[Louima Cunningham]]></dc:creator>
		<pubDate>Mon, 01 Apr 1996 00:00:00 +0000</pubDate>
				<category><![CDATA[Issue 14 (April - June 1996)]]></category>
		<category><![CDATA[biological]]></category>
		<category><![CDATA[cell]]></category>
		<category><![CDATA[cells]]></category>
		<category><![CDATA[cilia]]></category>
		<category><![CDATA[composition]]></category>
		<category><![CDATA[disease]]></category>
		<category><![CDATA[epithelial]]></category>
		<category><![CDATA[gastrointestinal]]></category>
		<category><![CDATA[gel]]></category>
		<category><![CDATA[goblet]]></category>
		<category><![CDATA[mucin]]></category>
		<category><![CDATA[mucins]]></category>
		<category><![CDATA[mucus]]></category>
		<category><![CDATA[respiratory]]></category>
		<category><![CDATA[Science]]></category>
		<category><![CDATA[tract]]></category>
		<guid isPermaLink="false">http://107.21.79.195/all-issues/1996/issue-14-april-june-1996/the-extraordinary-virtues-of-mucus/</guid>

					<description><![CDATA[Mucus is our first barrier against the outside world. It is found on the luminal side of most epithelial surfaces, for instance the mouth, respiratory tract, gastrointestinal tract, urogenital tract, joint surfaces and corneal surfaces. However, we are largely unaware of the importance of our mucus until something goes wrong in these systems. For example [&#8230;]]]></description>
										<content:encoded><![CDATA[<p>Mucus is our first barrier against the outside world. It is found on the luminal side of most epithelial surfaces, for instance the mouth, respiratory tract, gastrointestinal tract, urogenital tract, joint surfaces and corneal surfaces. However, we are largely unaware of the importance of our mucus until something goes wrong in these systems. For example when we have a cold or inhale some dust or pollen, we become aware of our own mucus as an unpleasant, slimy and messy nuisance; or when someone swallows something dangerous like a safety pin or a nail, in most cases it passes through the stomach and gut causing very little damage because of the secretion of mucus which protects and lubricates the epithelial surfaces of the tract. So what is this unpleasant hut vital nuisance?</p>
<p>Mucus is a viscoelastic gel-like material. It has been used to describe the coating and/or lining layers of vertebrates (e.g. fish, mammals) and invertebrates (e.g. coelomates, molluscs) (Rose, 1992). As noted earlier, in mammals the term mucus is restricted to the material covering the epithelial surfaces and providing an interface between the external environment and the epithelial layers. In vertebrates, this interface provides lubrication, maintenance of tissue hydration, and cytoprotection against proteases &#8211; a group of enzymes that break down the bonds amoung aminoacids &#8211; pH extremes, chemical irritants, and biological agents. Whereas invertebrate mucus has additional biological functions, like navigation, locomotion, and structural support (Denny, 1989). In the human both, the importance of these biological functions may vary depending on the location of the mucus: for example, in the respiratory tract, to clear the airways of inhaled particles: in the eyes, to prevent corneal surfaces from drying: in the reproductive tract, to protect the uterine cavity and control the survival and penetrability of the spermatozoa. However, there is one important function common to all systems, namely the maintenance of the mucosal water balance.</p>
<h3><b>The composition of mucus</b></h3>
<p>It is important to know something about the biological composition of mucus. In humans, this viscoelastic gel usually contains more than 90% water, 0.5-5% high molecular weight glycoproteins, termed mucins, and also a large number of other components such as electrolytes, lipids, plasma proteins and nucleic acids. Mucins are extremely large and heavily glycosylated molecules that consist primarily of a non-globular, thread-like polypeptide backbone and 0-linked oligosaccharide side chains. Within the mucin producing cells the molecules are found, without water, within large membrane-bound granules that fill the upper part of the cell. It appears likely that the mucins are the major determinants of mucus behaviour, and non-mucin constituents such as DNA, lipids and proteins are, when present, likely to influence the properties of the gel (Carlstedt, 1988). However, acidic mucopolisaccharides and glycoproteins are the major macro- molecular components of mucus in other animals, such as marine snail mucus (Rose, 1992).</p>
<p>In general, the gel forming mucin macromolecules have an oligomeric structure and are assembled from subunits via disulphide bonds. They can be fragmented into subunits by reduction of these disulphide bonds (Thornton. 1995). On the basis of their sensitivity to proteases it is believed that mucins typically contain two different types of domains that are highly glycosylated regions (rich in serine and threonin) and ‘naked’ hydrophobic regions that have lower substitution with carbohydrates. Where when and how does such a complex substance get synthesized, assembled and secreted? And what can happen if the process goes wrong or gets out of balance?</p>
<h3><b>In the gastrointestinal tract</b></h3>
<p>One of the common places where mucus has many vital functions is the gastrointestinal tract. The main site of production of intestinal mucin is the goblet (mucous) cell. However; there is a small amount of mucus production in columnar cells (intestinal epithelial cell). Mucus secretion is probably under both neural and hormonal control. However, little is known about exocytosis in which the membrane of the granules fuses with the apical plasma membrane, thereby releasing its contents.</p>
<p>In this tract, mucus forms a protective layer between the epithelial surface and the luminal compartment, and has been indicated in the mechanical protection of the gastrointestinal epithelial cells from bile acids, pH extremes, digestive enzymes, biological agents such as bacteria, virus and parasites, and mechanical damage. Also, in the stomach, mucus provides a mixing and diffusion harrier which protects the stomach wall from the damaging effects of the secreted hydrochloric acid which plays a big part in the digestion of our food. Bicarbonate ions are secreted into the unstirred mucus layer to help neutralize the acid and limit its harmful effects (Flemstrom, 1987). We are unaware of this function of mucus generally; however, when someone has a stomach or duodenal ulcer, or any types of gastritis, they have to take some anti- acidic drugs and so become aware of their neutralizing mucus blanket.</p>
<p>We know little about the involvement of gastrointestinal mucus in disease. It is suggested that there is a selective loss of a ‘specific’ mucin subpopulation in ulcerative colitis which is an inflammatory intestinal disease (Podoisky &amp; Isselbacher, 1984). Many recent studies indicate that mucins secreted by colorectal carcinoma are immunologically and biochemically different from those in normal colon and adenomatous colon in which there is epithelial benign tumour and/or tumours in the colorectum (Gendler eta1., 1990; lass et al., 1994). Moreover, it has been shown that some components of mucus can be employed as a marker for colonic carcinoma and pre-cancerous conditions (Guang &amp; Abdulkalam. 1995).</p>
<h3><b>In the respiratory tract</b></h3>
<p>Another common place for mucus is the respiratory tract, where mucus is produced by submucosal glands and by goblet cells interspersed among the ciliated respiratory epithelial cells. The cilia are like tiny hairs and are very numerous on epithelial cells of the upper respiratory tract. There maybe 250 or more cilia on the surface of a ciliated epithelial cell, arranged in regular rows. The ciliated epithelial cells, together with a thin mucus layer, constitute the mucociliary transport system designed to clear the airways from foreign particles such as dust, pollen, bacteria or other harmful particles. When we inhale these harmful particles into the lungs, a local stimulation of mucus secretion is evoked. The mucus blanket surrounds the particle and is moved by the cilia which beat in a rhythmical, wave-like manner into the trachea and from there it is swallowed to the gastrointestinal tract. In this propelling the gel towards the pharynx (the upper part of the trachea), the tips of the cilia interact with the mucus layer so that the energy can be passed from the cilia to the mucus blanket. If something goes wrong with the ciliated epithelium or the epithelium is depleted of mucus, this transport may not necessarily occur.</p>
<p>Although in healthy individuals goblet (mucous) cells represent on average 1/10 of ciliated cells, in a chronically obstructed airway (when diseases such as bronchitis, asthma, bronchorrhea and cystic fibrosis are present) the number of the goblet cells and of the submucosal glands increases markedly. In these particular diseases, hyperplasia of goblet cells, hypertrophy of submucosal glands and the hypersecretion of mucus are the prominent features of the pathological process. The most common inherited disease where mucus is very important is cystic fibrosis. This disease appears in about 1 in 2000 people born in Europe and America, although 1 in 20 people carry the defective gene. In this case mucus is stickier than normal and so the abnormally sticky mucus cannot be easily removed from the lungs. Instead of acting as the means for removing bacteria, the mucus becomes a breeding medium for them and the complications of the resulting infection ultimately lead to early death. </p>
<h3><b>In the reproductive tract</b></h3>
<p>Besides the gastrointestinal and respiratory tracts, mucus is very important also in the reproductive tract. The cervical canal, the entrance to the upper reproductive tract, is filled with mucus whose biological functions are to protect the genital tract from infection and to control the survival and penetrability of the spermatozoa (male germ cell). The amount and physical properties of mucus vary during the ovulatory cycle. At ovulation, when the woman produces ova from her ovary, there is an increased hydration of mucus which results in a watery secretion with high spermatozoal penetrability and low viscoelasticity (Wolf et al., 1978). In contrast, during the luteal phase, the second part of the menstrual cycle, the mucus is scant, contains less water and provides an effective barrier to the spermatozoa (Carlstedt et al., 1988). During pregnancy a large mucus plug blocks the cervical canal in order to protect the uterine cavity including the baby from any external effects. If the composition of the mucus changes during the early stages of the pregnancy, this mucus plug may become defective and the pregnancy may result in abortion or premature birth. It has been shown that high levels of cell-surface MUC1 (a mucin gene product) inhibit both cell-cell and cell-matrix adhesion that is important in human embryo implantation and this occurs in the mid-secretory phase of the menstrual cycle (Aplin &amp; Hey, 1995). Moreover, the changing of mucus composition may be an important factor in infertility, because it controls the survival and penetrability of the spermatozoa. Also, there is the same significant alteration in the biochemical characteristics of the mucus in endometrial carcinoma.</p>
<h3><b>Alterations in mucus composition </b></h3>
<p>As mentioned earlier, there are some notable alterations in the biochemical characteristics of mucins in many diseases. For example, in chronic obstructive respiratory disease excess mucus is present in airways. In cancer, one frequently finds abnormal carbohydrate structures on mucins that can serve as surrogate markers for tumour progression. Also, mucin peptide epitopes that are normally covered with carbohydrates become uncovered and can serve as markers. Since membrane mucins can function as anti-cell adhesion molecules, and their over expression in cancer may facilitate tumour dissemination and therefore metastases. However, there is still a lot of work to be done to understand biosynthesis, secretion and functions of the mucus, especially mucins, in healthy people or in diseased conditions. How is it that mucus can change in response to environmental influences, bacterial attack, or hormonal balance? What is the relationship between mucus and the progression of cancer or such kind of life-threatening diseases? It is clear that mucus is susceptible to almost infinite and rapid modification. When we understand how this capability is employed and controlled, we may be one step nearer to controlling sonic life-threatening diseases, such as cystic fibrosis, cancer, or some abnormal conditions, like infertility and miscarriage.</p>
<p>As a conclusion we can say that mucus may appear a sticky, tiresome, messy nuisance hut it is obvious that a life without mucus would he extremely uncomfortable. It is a gift of the Creator to all living beings, and a miracle, many of whose wonderful mysteries remain to he discovered. </p>
<h3><em><b>References</b></em></h3>
<ul>
<li>Aplin J.D. &amp; HEY NA. (1995) ‘MUCl, Endometrium and Embryo Implantation’, Bioch, Soc. Trans., 23, pp. 826-31.</li>
<li>Carlstedt I. (1988) Mucus Gylcoproteins: Structure and Macromolecular Properties, Lund University Press, Lund,</li>
<li>Denny M.W, (1989) ‘Intervertebrate mucus secretions: functional alternatives to vertebrate paradigms’. Symp. Soc. Exp. hal. 43, p. 337.</li>
<li>Flemstrom (3. (1987) Physiology of Gastrointestinal Tract, Raven Press, New York, pp. 1011-29.</li>
<li>Gendler S.J., Lancaster C., Taylor-Papadimitriou J., Duhig T., Peat N., Burchell ,J.. Pemberton L., El-Nasir I .., Wilson D. (1990) ‘Molecular</li>
<li>cloning and expression of human tumour-associated polymorphic epithelial mucin’. .J Biol. Chem. 265, pp. 15286-93.</li>
<li>Guang Y.Y. &amp; Abdulkalam MS. (1995) ‘A new monoclonal antibody, CMU1O, as a marker for colonic carcinoma and precancerous conditions’. Arch, Pathol. Lab. Med., 114, Mayc pp. 454-60.</li>
<li>Jass JR., Robertson A.M. (1994) ‘Colorectal mucin histochemistry in health and disease: a critical review’, Pathol. Int,. 44, pp.487-504.</li>
<li>Podolsky D. &amp; Isselbacher K.J. (1984) Gastroenterology, 87, pp.99 1-8. Rose MC. (1992) ‘Mucins: structure, function, and role in pulmonary diseases’. The Am. Physiol. Soc., pp. L413-L429.</li>
<li>ThorntonD.J., Howard M., Devine P.L.,. Sheehan J.K. (1995) ‘Methods for separation and deglycosylation of mucin subunits’. Analytic Biochemistry. 227, pp.162-7.</li>
<li>Wolf DR Blasco L., Khan M.A., Litt M. (1978) , Fertil. Steril. 30, pp.163-9</li>
</ul>
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		<title>Sociobiology</title>
		<link>https://fountainmagazine.com/all-issues/1996/issue-13-january-march-1996/sociobiology/</link>
		
		<dc:creator><![CDATA[Louima Cunningham]]></dc:creator>
		<pubDate>Mon, 01 Jan 1996 00:00:00 +0000</pubDate>
				<category><![CDATA[Issue 13 (January - March 1996)]]></category>
		<category><![CDATA[argue]]></category>
		<category><![CDATA[biological]]></category>
		<category><![CDATA[biology]]></category>
		<category><![CDATA[composed]]></category>
		<category><![CDATA[gene]]></category>
		<category><![CDATA[genes]]></category>
		<category><![CDATA[genetics]]></category>
		<category><![CDATA[human]]></category>
		<category><![CDATA[lead]]></category>
		<category><![CDATA[life]]></category>
		<category><![CDATA[molecular]]></category>
		<category><![CDATA[nature]]></category>
		<category><![CDATA[organism]]></category>
		<category><![CDATA[organisms]]></category>
		<category><![CDATA[Science]]></category>
		<category><![CDATA[selfish]]></category>
		<category><![CDATA[social]]></category>
		<category><![CDATA[sociobiology]]></category>
		<guid isPermaLink="false">http://107.21.79.195/all-issues/1996/issue-13-january-march-1996/sociobiology/</guid>

					<description><![CDATA[In all biological systems, the organism of the future is encoded in the macro molecular structure of DNA (Deoxyribonucleic Acid). It is this molecular architecture, present in every cell, that determines all the characteristics of an organism. Genetics is commonly taken to refer to a part of biology that concerns itself with the study of [&#8230;]]]></description>
										<content:encoded><![CDATA[<p>In all biological systems, the organism of the future is encoded in the macro molecular structure of DNA (Deoxyribonucleic Acid). It is this molecular architecture, present in every cell, that determines all the characteristics of an organism.</p>
<p>Genetics is commonly taken to refer to a part of biology that concerns itself with the study of the transmission of hereditary characters. This fascinating science would have remained quite benign if this was all that it was. However, recombinant DNA technology with all the power it offers for biological control has changed all that. By making it possible to manipulate the reproductive potential of an organism, modern genetics has the power to alter the course of development of living organisms. Life can be changed, for good or ill; it can be enhanced or retarded or mutilated. Moreover, whatever molecular genetics can do to the biological world can in principle, be done to human beings. Molecular genetics poses a grave threat to our notions of human life, its intent and its meanings.</p>
<p>In his book <em>Responsible Science</em> (1986), Robert Nelson wrote: </p>
<p>The challenge of molecular biology to traditional humanistic and religious concepts of human life needs to be taken very seriously. Not only the nature of life, but its purpose and worth are called into question by the rapidly growing knowledge of DNA and cellular development. If the human organism can ostensibly be reduced to an assortment of proteins and amino acids, hardly distinguishable at molecular levels from those of other organisms, where is the distinctiveness of human life to he found? And if found, how explained?</p>
<p>Biology, especially in the form of using genetics and evolution to explain social phenomena, has become a reductionist exercise. Reductionism means trying to explain the properties of complex wholes-molecules, say or societies-in terms of the units of which those wholes are composed. Scientists who are reductionists would argue, for example that the properties of a protein molecule could be uniquely determined and predicted in terms of the properties of the electrons, protons, etc., of which it atoms are composed. In a similar way, they could (and some do) argue that the properties of a human society are no more than the sum of the behaviours and tendencies of the individual humans of which that society is composed.</p>
<p>Genetics and evolution, as indicated above, have been used to explain social phenomena. This is the area of science called sociobiology. It is a discipline that passes moral judgement on many social issues because it presents biology as the human fate, an inescapable reality of nature. Since it is natural, the implication is that it is immutable.</p>
<p>Sociobiologists equate the social with the biological and maintain that differences of class, race, colour, gender and even economic status originate in individual biology. This type of thinking could lead to dangerous conclusions of a sort most of us would regard as immoral and unethical. It can lead, for instance, to the belief that some races are born ‘inferior’ to others; that women are inferior’ to men; IQ (Intelligence Quotient) is genetically determined; that social inequalities (wealth and poverty) are biological in origin. The big problem with this is that political leaders could use such arguments to assert that the current social order must prevail because it is the law of nature.</p>
<p>Sociobiology reached its peak when some biologists claimed to have discovered absolute evidence for genetic determinants of human behaviour. In his popular book <em>The Selfish Gene</em> (1976), Richard Dawkins wrote:</p>
<p>We, and all other animals, are machines created by our genes. Like successful Chicago gangsters, our genes have survived, in some cases for millions of years, in a highly competitive world. This entitles us to expect certain qualities in our genes. I shall argue that a predominant quality to be expected in a successful gene is ruthless selfishness&#8230; Much as we might wish to believe otherwise, universal love and the welfare of the species as a whole are concepts which simply do not make evolutionary sense &#8230; If you wish &#8230; to build a society in which individuals cooperate generously towards a common good; you can expect little help from biological nature.</p>
<p>The selfish gene thus operates to enhance its own selfish interests. The theory is based on the belief that genetic differences lead to behavioural differences, and that organisms are hosts to genes rather than the other way round. This provides the basis, as sociobiologists themselves claim, for the systematic study of the biological basis of all forms of social behavior, including sexual and parental behaviour, in all, kinds of organisms, including humans.</p>
<p>More and more human attributes are being subjected to a biological explanation. The Islamic view of human nature, however, does not consider biology as an inevitability. Human morality is the most important determinant, encompassing the spiritual dimension beautifully: <em>The most honoured among you in the sight of God is the most righteous among you. And God has full knowledge and is well acquainted [with all things]. </em> (Hujurat, 49.13)</p>
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		<title>Biological Change</title>
		<link>https://fountainmagazine.com/all-issues/1995/issue-12-october-december-1995/biological-change/</link>
		
		<dc:creator><![CDATA[Louima Cunningham]]></dc:creator>
		<pubDate>Sun, 01 Oct 1995 00:00:00 +0000</pubDate>
				<category><![CDATA[Issue 12 (October - December 1995)]]></category>
		<category><![CDATA[adaptation]]></category>
		<category><![CDATA[balance]]></category>
		<category><![CDATA[biological]]></category>
		<category><![CDATA[change]]></category>
		<category><![CDATA[creation]]></category>
		<category><![CDATA[diversity]]></category>
		<category><![CDATA[divine]]></category>
		<category><![CDATA[environmental]]></category>
		<category><![CDATA[evolution]]></category>
		<category><![CDATA[explain]]></category>
		<category><![CDATA[food]]></category>
		<category><![CDATA[genetic]]></category>
		<category><![CDATA[god]]></category>
		<category><![CDATA[living]]></category>
		<category><![CDATA[mutations]]></category>
		<category><![CDATA[qur’an]]></category>
		<category><![CDATA[random]]></category>
		<category><![CDATA[scientific]]></category>
		<category><![CDATA[See-Think-Believe]]></category>
		<category><![CDATA[species]]></category>
		<category><![CDATA[survival]]></category>
		<guid isPermaLink="false">http://107.21.79.195/all-issues/1995/issue-12-october-december-1995/biological-change/</guid>

					<description><![CDATA[One argument advanced by those who accept (or, rather, who believe) the theory of evolution against those who believe in creation is this: ‘We put forward certain concepts related to evolution, right or wrong, for the sake of enabling and informing scientific understanding. But you merely refuse and refute this effort. You ignore a lot [&#8230;]]]></description>
										<content:encoded><![CDATA[<p>One argument advanced by those who accept (or, rather, who believe) the theory of evolution against those who believe in creation is this: ‘We put forward certain concepts related to evolution, right or wrong, for the sake of enabling and informing scientific understanding. But you merely refuse and refute this effort. You ignore a lot of biological facts, such as adaptation and natural selection, in order to deny evolution, but you can neither interpret those facts, nor offer any alternative ideas in a persuasively scientific manner.’</p>
<p>By answering this argument we shall show that we do indeed accept the same biological facts, but do not agree about the ‘laws’ which try to explain them, nor about the limits and qualifications for the operation of those ‘laws’.</p>
<p>Unlike other Scriptures which claim Divine authority, there is no proposition in the Qur’an which can be contradicted by established scientific knowledge as untrue. The Qur’an does not underestimate the importance of reflection and argument, but it does indicate that our suppositions about the origin of creation cannot explain the reality of it: we simply were not present there.</p>
<p>I called them not to witness the creation of the heavens and the earth, nor their own creation: Nor is it for Me to take as helpers such as lead (men) astray (al-Kahf 18.51).</p>
<p>This verse should not be interpreted to mean ‘Do not ask questions or do not research’, for the Qur’an encourages scientific research explicitly. It is, rather, a warning about those who vainly claim to explain the phenomena which happen outside the normal course of events and cannot be described in terms of material causes and effects. Since the creation is the great, inclusive miracle, human beings can neither imitate it (that is, they cannot create out of nothing) nor explain it. To attribute the creation to God makes everything plausible and saves scientific inquiry from fruitless uncertainties and insecure speculations. To understand the basic principles of the reality of creation is most important. If they are properly understood, useful and worthwhile aspects of the theory of evolution can be sifted out from pretentious and false interpretations of it. For, in every idea, even if it is against common sense in general, there are some elements of truth. The biological facts, rightly so called, such as variation, adaptation, natural selection and mutation, in evolution theory, should be differentiated from the ideological and metaphysical baggage they have accumulated.</p>
<p>In our approach, evolution may be described as the changes and variations in the form of creatures, especially in living beings, and the genetic and environmental factors associated with those changes. We do not assert that living beings are fixed and unchangeable in their forms. To claim that would imply a limitation upon the knowledge and power of God which is contradictory to His Names, the All-Knowing and the All-Powerful. The creation reflects His Names through its novelty within renewal, its prolific variety amid abundance. Individual diversity is programmed into the genetic mechanisms which, as they unfold and evolve under the prompting of environmental factors, display (for our admiration and understanding) the action in the world of Divine grace and power. The many hundreds of apples on a single tree are not identical, nor are they identical over different seasons-they are only similar. Thus, the first emphasis in our definition of the concept of evolution is change which is vital for the maintenance of ecological diversity and balance.</p>
<p>To paraphrase the Qur’an: God imposes the law of change and evolution as a basic principle in the universe. In the enforcement of this law, He creates pairs and opposites which, interacting according to subtle purposes, are placed in the core of every being. Thus, the change-dependent evolution and the dynamic balance in the universe, have been realized through the intersection of the opposites continually since the outset of creation. There are many verses in the Qur’an (for example in Chapter 55, al-Rahman) which indicate change and balance.</p>
<p>The ideologues of evolution theory, however, ignore the Divine wisdom, measure and purpose in the universe, claiming that the change they observe is an effect of coincidences-random variations, aimless mutations.</p>
<p>In the light of recent findings, we know the apparent causes of change to be mutations, which are the hereditary alternations in the genetic information; the differentiation of an isolated population from its ancestor through multiplying inside the population; adaptation and so-called ‘natural selection’, that is the decrease or extinction of generations which are weak and unable to reproduce in their immediate environment.</p>
<p>Believers in the One God affirm that everything, from subatomic particles to galaxies, is created by Him, that He is Omniscient and Omnipotent, and everything acts under His will and command. Causes are created by God in the appropriate time and space and the appropriate order and combination as a sort of veil for His dignity and might. He only says ‘Be!’, and all the material causes, such as heat, moisture, air, chemical elements, radiation, etc., are. If such causes are seen in this way, if their being brought together into an order is understood to be a response to their need (their prayer) to participate in a collaborative universe-and if their being causes is confirmed by observations and experiments-then, we may regard causes as a useful way to explain biological phenomena.</p>
<p>We know that diversity in a species is realized through mutations in the genetic program, arranged by Divine wisdom, not by coincidence. The evolutionist idea that the mutations are arbitrary, that useful changes can occur by sheer chance and lead to the development of a living being, or that a lot of random mutations can accumulate to enable a sudden leap from one species to another, has not been confirmed by experiments and observations. To accept that the mutations are arbitrary interferences in the genetic order is like accepting that a rocket can be generated out of a sound aircraft by raking it randomly with machine-gun fire. Certainly, computer-aided probability calculations show that it is impossible for thousands of random mutations to accumulate on a living being and change it into another species. Any such change is manifestly against that organism’s survival and would have to overwhelm it suddenly, not gradually.</p>
<p>Some bacteria can be given the ability to synthesize insulin by means of genetic engineering. This is a kind of planned mutation. Such a transfer of ability is, though remarkable, a relatively small change: it is, in any case, only possible because of the relevant ability being present in the genetic material being transferred. It is sheer arrogance to claim that living beings having millions of such able genes have evolved from each other by arbitrary, random mutations.</p>
<p>Adaptation is a biological manifestation of the flexibility coded into the genetic programs of living organisms; it carries the potential, within the limits of the species, for the organism to survive in changing conditions and to sustain that survival through reproduction.</p>
<p>When environmental conditions change, responsive adaptations occur- e.g. change of colour or density of hair, size of ears-in proportion to the flexibility of the organism’s genetic potential. If the organism cannot adapt adequately, the species does not mutate into some new species, it goes extinct. That is what happened, we presume, to dinosaurs and dodos.</p>
<p>The diversity of various human races can also be explained by the flexibility of their genetic potentials in response to different geographical, climatic and environmental conditions, provided, as before, that the changes are contained within species boundaries. Intermarriages between the various races add to the diversity within the species boundaries, they do not yield another species. The working of genetic potential can also be seen in the way that insects adapt to pesticides, and certain bacteria acquire a nearly invincible resistance to particular antibiotics. Insects or bacteria become more resistant, but they do not become different species. Their potential for adaptation is understood, by believers, as a power to survive given to them by Divine Wisdom.</p>
<p>We do not wholly reject the concept of natural selection. However, it is necessary to criticize the extreme interpretation evolutionists make of it. First of all, there is not an absolute ‘cruel competition’ in nature which the strong dominate absolutely, nor a pitiless ‘selection’ process of exterminating rivals in the struggle for food (survival). Rather, there is a dynamic balance among the great variety of creatures which is characterized, overall, by mutual collaboration and solidarity. The killing of weak creatures by the stronger ones is not random, nor characterized by a drive to exterminate and monopolize resources for survival. On the contrary, it is, overall, purposive and beneficial. Predators prey, generally, on weak and sick animals, and this ‘selects’ the fit and healthy for survival and, quite probably, prevents epidemics within and between species. Also, it is manifestly obvious that the apparent ‘competition’ in nature is the outward face of a subtle and complex feeding chain which is vital for the overall balance of the ecosystem, providing niches for great numbers of species, not least those which feed on the left-overs of others thus cleansing and purifying the food-chain.</p>
<p>Another factor affecting natural selection is the difference in rates of breeding. One bacterium multiplies by millions in one day, a fly by thousands in two days. Vertebrates, except fish and amphibians on the other hand, breed far more slowly. From the base of the food pyramid to the top, the production of food increases in quality but decreases in mass, and consequently a lot of tiny living organisms are the food of larger ones. The difference in breeding rates among members of the same species causes rapid multiplying of a certain group, but not the change of its species. An organism with many young has more opportunity to survive in changing environmental conditions, because when the number of its young increases, so too do the combinations of genetic characters. Even after drastic environmental changes, a few may survive.</p>
<p>The concepts used by evolutionists used to explain biological realities have a merely nominal reality, they are far from being ultimate causes. Attributing reality or, worse, Divine power to concepts which can be useful only for building mental models, and ignoring the knowledge, might and eternal wisdom of the Creator, means binding our hearts and minds to nature, like nature-worshippers and polytheists generally.</p>
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