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	<title>immune &#8211; Fountain Magazine</title>
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		<title>The Macro and the Micro: Introducing Two New Organs You Never Knew You Had in Your Body</title>
		<link>https://fountainmagazine.com/all-issues/2020/issue-133-jan-feb-2020/the-macro-and-the-micro-introducing-two-new-organs-you-never-knew-you-had-in-your-body/</link>
		
		<dc:creator><![CDATA[Numan Erciyes]]></dc:creator>
		<pubDate>Wed, 01 Jan 2020 16:35:03 +0000</pubDate>
				<category><![CDATA[Issue 133 (Jan - Feb 2020)]]></category>
		<category><![CDATA[bacteria]]></category>
		<category><![CDATA[biology]]></category>
		<category><![CDATA[body]]></category>
		<category><![CDATA[cells]]></category>
		<category><![CDATA[centers]]></category>
		<category><![CDATA[discovered]]></category>
		<category><![CDATA[fight]]></category>
		<category><![CDATA[foci]]></category>
		<category><![CDATA[Highlights]]></category>
		<category><![CDATA[human]]></category>
		<category><![CDATA[immune]]></category>
		<category><![CDATA[infection]]></category>
		<category><![CDATA[interstitium]]></category>
		<category><![CDATA[lymph]]></category>
		<category><![CDATA[memory]]></category>
		<category><![CDATA[nodes]]></category>
		<category><![CDATA[organ]]></category>
		<category><![CDATA[organs]]></category>
		<category><![CDATA[proliferative]]></category>
		<category><![CDATA[system]]></category>
		<category><![CDATA[tissues]]></category>
		<guid isPermaLink="false">http://107.21.79.195/all-issues/2020/issue-133-jan-feb-2020/the-macro-and-the-micro-introducing-two-new-organs-you-never-knew-you-had-in-your-body/</guid>

					<description><![CDATA[Robots continue to advance and develop every year, and these consistent improvements continue to amaze us with how much they physically resemble humans. Even though these robots lack spiritual qualities and function way below the human brain, we still admire these developments, for they lead to even more discoveries and help us understand the miraculous [&#8230;]]]></description>
										<content:encoded><![CDATA[<p><img fetchpriority="high" decoding="async" class=" size-full wp-image-6813" src="https://fountainmagazine.com/wp-content/uploads/2020/01/06-6eb.png" alt="The Macro and the Micro: Introducing Two New Organs You Never Knew You Had in Your Body" width="1920" height="1200" srcset="https://fountainmagazine.com/wp-content/uploads/2020/01/06-6eb.png 1920w, https://fountainmagazine.com/wp-content/uploads/2020/01/06-6eb-300x188.png 300w, https://fountainmagazine.com/wp-content/uploads/2020/01/06-6eb-1024x640.png 1024w, https://fountainmagazine.com/wp-content/uploads/2020/01/06-6eb-768x480.png 768w, https://fountainmagazine.com/wp-content/uploads/2020/01/06-6eb-1536x960.png 1536w" sizes="(max-width: 1920px) 100vw, 1920px" /></p>
<p>Robots continue to advance and develop every year, and these consistent improvements continue to amaze us with how much they physically resemble humans. Even though these robots lack spiritual qualities and function way below the human brain, we still admire these developments, for they lead to even more discoveries and help us understand the miraculous human body even more.</p>
<p>Notwithstanding our medical knowledge that continues to build upon nearly 3,000 years of shared human experience and research, new discoveries about the human body, the magnificent work of God Almighty, continue to increase our admiration.</p>
<p>The discovery of the “<em>Interstitium”</em> and the “<em>Subcapsular Proliferative Foci”</em> in 2018 allow us to develop an even greater appreciation for the complexity of our bodies. They are called the “macro organ” and “micro organ” according to the amount of space that they occupy in our bodies, along with the nicknames “buffer organ” and “control center organ” according to their function. These newly discovered biological structures did not attract much attention earlier because, in accordance with our current understanding, organs are more easily visible structures such as the hands, arms, eyes, nose, kidneys, and lungs that have a certain shape and a set of clearly-defined functions. It is interesting that although these complex structures are so widespread in our bodies, they were not known until recently; they are now considered as organs [1].</p>
<h3><strong>The Macro Organ: <em>Interstitium</em></strong></h3>
<p>According to an article published in <em>Scientific Reports</em> on March 27, 2018, the “<em>interstitium</em>” was discovered rather serendipitously by David Corr-Loce and Petros Benias of Mount Sinai Beth Medical Center along with Neil Theise, a pathologist from New York University. The discovery came when these physicians were analyzing a cancer patient&#8217;s bile duct. Although they had been conducting the same routine over the years, it was the first time they had the sight of slots between examined tissues. They realized that the interstitium was unnoticed earlier due to the disappearance of interstitial fluid after they had examined the tissue with their usual histological methods. Subsequently, the researchers found that this structure was found not only in the bile duct but also in many other organs.</p>
<p>Specifically located under our skin, these micro-compartments were also found in almost all organ membranes except the intestines, lungs, veins, and muscles in order to form a network around the organs with malleable but sturdy proteins. The interstitium, the entirety of the intercellular spaces filled with liquid, has been defined as the largest organ in the body. Actually, examining cells and tissues has been the subject of histology and cytology science for the last 150 years, and the fluid that fills the tissues and forms a basis for supporting these cells was not new to the medical world. However, its definition as a new organ was a first.</p>
<p>The researchers froze the biopsy tissues obtained from the bile ducts of 12 patients in order to preserve and examine the anatomy of the discovered structure. One of the reasons that this organ exists is because it protects the surrounding organs by acting as a shock-absorber and has an effect similar to that of a car&#8217;s bumper. Damage to tissues and internal organs remains minimal when one falls, hits something or is impacted Using a micro-endoscopic camera, the volume of this whole organ was revealed to be about ten liters in an adult human [2].</p>
<p>It was later discovered that the interstitium is also present in the structure of lymph nodes, the most important part of the body&#8217;s immune system, and that cancer cells enter the lymphatic system through the interstitium. In this case, the interstitium play a significant role as a passageway, or conduction interface, for spreading cancer cells across the body. In an analogy, this organ is akin to the water in which fish swim, the air that surrounds us, and the soil that borders the roots of trees. In this liquid that rotates the cells and spans on the base where they are positioned, any exchange of substances of body biochemistry is regulated within the required amount and size to provide a good setting to the cells, and the hard mechanical effects that may impact the cells are alleviated and absorbed by this liquid pad.</p>
<p>Each discovery of the interstitium’s features, including its significant contributions in the fight against cancer, reveals more and more about how this great organ aids in intercellular communication.</p>
<h3>The Micro Organ: Subcapsular Proliferative Foci</h3>
<p>One of the most important features of the immune system is that it has its own “memory.” The cells of the immune system can remember the infections a person has contracted before, and can fight infections before they spread. How quickly the immune system reacts based on memory may vary, for instance depending on the type of infection, but is usually quite rapid. Considering how many bacteria multiply in a matter of seconds, a quick response must be launched to prevent infections from spreading across the body.</p>
<p>Professor Tri Phan of the Garvan Medical Research Institute led the team of researchers that discovered the subcapsular proliferative foci (SPF), a “micro-organ” that appeared in the lymph nodes during an infection. Lymph nodes and lymphoid organs such as tonsils, thymus, and spleen are surrounded by a protective capsule made of connective tissue. This capsule was considered to serve the purpose of a mechanical support only to enclose and protect the lymph nodes. However, recent research has shown that in some areas under this capsule, cells that had been alerted to previous encounters with harmful invasive organisms are gathered. These main subcapsular cells are memory B cells that carry information on how to counter the invasive organisms. Memory B cells also proliferate into plasma cells, which are highly important for producing antibodies. Therefore, when an infection reoccurs in our body the subcapsular proliferative foci act quickly to form the first defensive front to prevent the possible spread of infection.</p>
<p>The purpose of vaccines is to activate the attenuated form of a harmful organism to be stored in the body’s memory as an immune response. If the body comes back into contact with similar bacteria in the future, the immune system will remember how to fight it. The discovery of the sub-capsule foci also revealed that these centers are the home for the memory B cells. If they can unveil the development and training processes of the memory B cells in these slots, scientists can produce vaccines that enhance the memory of the immune system even more quickly and efficiently.</p>
<p>The reason why these structures have not been noticed earlier is due to their emaciation, brief emergence, and disappearance. The sub-capsule proliferation centers presented in the article “<em>Memory B Cells Are Reactivated in Subcapsular Proliferative Foci of Lymph Nodes</em>” published in <em>Nature Communications</em> on August 22, 2018 are defined by some authoritative scientists as the “micro-organ.” According to the findings about this new organ, if our infection-fighting immune system would have activated longer than it currently does, we would easily die. Every minute is very crucial in this struggle. These excellent centers that produce memory cells under the lymph node [3] capsules fight bacteria which can replicate in multitudes every 20–30 minutes during an infection.</p>
<p>Although the world of science has been working with the microscope for about 400 years, these centers that have been embedded in our body since its creation could only be noticed today when the microscope design has reached its technological peak.</p>
<p>There are trillions of bacteria living in the intestinal cavity, skin, and orifices of our body. Some of these are already protective and beneficial, yet others are pathogenic. But they do not make us sick because of B cell production centers. When our immune system is weakened for any reason (such as stress, insomnia, or malnutrition) these bacteria can cause illnesses and meet little resistance. These sub-capsular micro-organisms surrounding the lymph nodes were placed in the most strategic places across the human body to fight infections in the fastest way, while the lymph nodes were placed at locations that are most vulnerable to microbial attack.</p>
<p>Consequently, these discoveries increase our admiration for the palace and magnificent realm called our body. It is likely in the light of this information that the anatomy and histology books may be rewritten and the definitions of organs and tissues may be redefined.</p>
<h3><strong>References</strong></h3>
<ul>
<li>Claire Maldarelli, “<em>Scientists found a new organ, but it might not be what you’re expecting,</em>” <em>Popular Science</em>, 3 April 2018.</li>
<li><a href="http://www.iflscience.com/health-and-medicine/newly-discovered-microorgan-helps-explain-how-vaccine">iflscience.com/health-and-medicine/newly-discovered-microorgan-helps-explain-how-vaccine</a>.</li>
<li><a href="nature.com/articles/s41598-018-23062-6">nature.com/articles/s41598-018-23062-6</a></li>
</ul>
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		<title>Trypanosomes: Creatures with One Thousand and One Sheaths</title>
		<link>https://fountainmagazine.com/all-issues/2020/issue-133-jan-feb-2020/trypanosomes-creatures-with-one-thousand-and-one-sheaths/</link>
		
		<dc:creator><![CDATA[The Fountain]]></dc:creator>
		<pubDate>Wed, 01 Jan 2020 11:31:00 +0000</pubDate>
				<category><![CDATA[Issue 133 (Jan - Feb 2020)]]></category>
		<category><![CDATA[antibodies]]></category>
		<category><![CDATA[antigen]]></category>
		<category><![CDATA[antigens]]></category>
		<category><![CDATA[body]]></category>
		<category><![CDATA[creature]]></category>
		<category><![CDATA[disease]]></category>
		<category><![CDATA[fly]]></category>
		<category><![CDATA[foreign]]></category>
		<category><![CDATA[host]]></category>
		<category><![CDATA[immune]]></category>
		<category><![CDATA[life]]></category>
		<category><![CDATA[medicine]]></category>
		<category><![CDATA[parasites]]></category>
		<category><![CDATA[parasitic]]></category>
		<category><![CDATA[produced]]></category>
		<category><![CDATA[Science]]></category>
		<category><![CDATA[sheath]]></category>
		<category><![CDATA[structure]]></category>
		<category><![CDATA[surface]]></category>
		<category><![CDATA[system]]></category>
		<category><![CDATA[trypanosome]]></category>
		<category><![CDATA[trypanosomes]]></category>
		<guid isPermaLink="false">http://107.21.79.195/all-issues/2020/issue-133-jan-feb-2020/trypanosomes-creatures-with-one-thousand-and-one-sheaths/</guid>

					<description><![CDATA[If you heard that a very destructive creature was in your village, what would you expect this creature to look like? Perhaps a ferocious cat, or a colossal beast that was capable of leveling whole buildings? Such a creature does exist in Africa, except it is a single celled bacterium by the genus Trypanosome, a [&#8230;]]]></description>
										<content:encoded><![CDATA[<p><img decoding="async" src="images/Issue-133/04png" alt="Trypanosomes: Creatures with One Thousand and One Sheaths" /></p>
<p>If you heard that a very destructive creature was in your village, what would you expect this creature to look like? Perhaps a ferocious cat, or a colossal beast that was capable of leveling whole buildings? Such a creature does exist in Africa, except it is a single celled bacterium by the genus <em>Trypanosome, </em>a microscopic creature with the capacity to strike fear into the heart of virtually an entire continent. Living a segment of its life as a parasite in the bloodstream of humans and other mammals, Trypanosome can trigger a lethal neurological disorder in the circulatory system. It has also been found that it is the cause of a serious sleep disorder in humans. The disease can ruin a person’s circadian cycle, cause fevers, and changes in personality. Unfortunately, about 60 million people in 36 of the 52 countries in Africa are at constant risk.</p>
<p>Another significant role in the lifecycle of trypanosomiasis is the tsetse fly, the bacteria’s most common intermediate host, which transports the Trypanosome from one mammalian host to another. Trypanosomiasis is endemic in a large area of approximately 3.8 million sq. mi. in Africa, where both the parasitic disease and the tsetse fly coexist. Moreover, the danger is not limited to humans because it also affects many other mammal species, most notably livestock and horses. Malnutrition often follows as a direct consequence when large swaths of animals are killed by trypanosomiasis, as there will be less meat and dairy to consume.</p>
<p>The trypanosome parasite invites disease for the host mammal by collapsing or neutralizing its immune system. Let us first remember how the immune system works:</p>
<h3>The immune system</h3>
<p>Every living thing is provided with two things: food and protective systems. Immune system is one of these vital systems. Most immune systems across mammals function in similar ways; Antibodies are produced to destroy toxic substances and antigens on foreign bacteria, fungal cells, or the virus sheath invading the body. These antigens can be found on the infected foreign cells and have a unique shape and structure according to the organism that causes each disease. The immune system binds to the antigens of the foreign organism in the same manner as a key-lock system with its antibodies produced while fighting against the disease, thus neutralizes the invading organism.</p>
<p>Most of the antigens, which reveal the identity of a foreign being, are structures created of proteins, polysaccharides, or protein-based fats. Our immune system has the sensitivity and the capacity to produce an infinitely diverse variety that can discern even quite identical but foreign substances bearing antigenic properties for our body. To draw an analogy, a specific antibody can be produced for each speck of dust on Jupiter. Our immune system is blessed with the ability to synthesize appropriate antibodies by selecting proteins that differ in type or location of one amino acid.</p>
<p><img decoding="async" class=" size-full wp-image-6802" src="https://fountainmagazine.com/wp-content/uploads/2020/01/image001-972.gif" alt="antibody antigen" width="192" height="271" /></p>
<p>The mechanism of binding of the antibody to the antigen is carried out with effective economy, because each type of antibody is produced specifically against a particular antigen. This mechanism works like a key-lock system, so the body recognizes its own cells and does not attack them. Each antibody produced in the immune system is created in a three-dimensional, one-to-one compatible structure with the antigen that causes it to be produced, and easily recognizes and locates it, binds as the key fits into the lock, and thus renders it harmless by disrupting the chemical structure of the antigen.</p>
<h3>Trypanosome and the immune system</h3>
<p>The case of trypanosome vs. the immune system is somewhat exceptional. The abovementioned almost universal immunity principle does not work against trypanosome. Even though parasites are constantly exposed to the mammalian immune system in the blood, they constantly change the antigen that forms the surface sheath. They thwart the host&#8217;s defense, as if rapidly changing their password so that it can never be guessed. Until the immune system produces new antibodies to bind to new antigens, some of the trypanosomes discard their sheaths and drape themselves in another one. If this condition persists, the immune system of the host cannot cope with the infection and may succumb to it.</p>
<p>This extraordinary phenomenon astonishes the scientific community and many scientists are investigating the molecular structure of antigen diversity extensively in African, European, and US laboratories. These parasites are only 0.015–0.030 mm in size, and its two most notorious species are <em>Trypanosoma rhodesiense</em> and <em>Trypanosoma gambiense</em>, which inflict serious damage on the human body.</p>
<p>Like many other parasitic species, the life cycle of trypanosomes is very complex. In each phase of this life journey, the parasite takes different forms and exhibits different characteristics in such an unusual way that generates curiosity. The life cycle can be summarized as follows: when the tsetse fly bites a disease-bearing mammal, the trypanosomes in the mammal’s blood are sucked up and settle in the middle intestine of the fly. They undergo a series of complex processes including several structural and biochemical changes. After about three weeks, the trypanosomes appear in the fly&#8217;s salivary glands in a disease-bearing form. Meanwhile, they are also draped in new surface sheaths.</p>
<p>When the secondary host fly bites a healthy person, the disease-causing trypanosomes enter the blood of the new host. In this new stopover, parasites are transformed into a form in which they can rapidly multiply. First, they wreak havoc in blood vessels and on lymph nodes, causing fever, marks and swelling in the body. At this stage, a constant struggle with the host&#8217;s immune system ensues. A likely invasion the patient&#8217;s central nervous system by the trypanosomes can cause intense drowsiness, coma, and eventually death.</p>
<p>In years of research on the trypanosomes, the thick surface sheath covering the cell membrane of the parasite was first described in 1965 by Keith Vickerman of the University of Glasgow. Shortly thereafter, different surface sheaths were discovered in different trypanosome clones. In 1968, Richard W. F. Page from the Molteno Parasitic Research Institute in Cambridge analyzed and decoded the isolated antigenic surface proteins from several clones, revealing that each clone had a biochemically different protein. The clarity of these differences suggests that each antigen is expressed by a different gene. In the 1970s, George Cross and his colleagues found evidence supporting Le Page&#8217;s proposal. These antigens are now called Variable Surface Glycoproteins (VSG). As a result of subsequent research, the picture became even more clear.</p>
<p>Once the infection has begun, antibodies are formed in the host&#8217;s immune system that bind to the variable surface glycoproteins that appear on the surface sheath of the invading parasites. These antibodies kill most of the initial trypanosomes. Yet interestingly, on a few remaining trypanosomes a new sheath to which antibodies cannot bind is built, and the trypanosomes evade the immune system’s grasp. The survivors induce a new population producing new variable surface glycoproteins. This time, the immune system produces new antibodies against these freshly constructed antigens. Meanwhile, the parasitic population grows. Newly produced antibodies are able to kill 99% of new parasites again. However, until that time, the parasitic group constituted by about 1% of the survivors has already changed its sheath. Hence, another population begins to multiply. This process of life being a struggle unfortunately continues until the host mammal dies.</p>
<p><img decoding="async" class=" size-full wp-image-6803" src="https://fountainmagazine.com/wp-content/uploads/2020/01/image002-345.jpg" alt="trypanosoma antigenic variation" width="377" height="294" srcset="https://fountainmagazine.com/wp-content/uploads/2020/01/image002-345.jpg 754w, https://fountainmagazine.com/wp-content/uploads/2020/01/image002-345-300x234.jpg 300w" sizes="(max-width: 377px) 100vw, 377px" /></p>
<p>The mechanisms of antigen diversity in trypanosomes are very complex and variable, and the total capacity to produce varieties is not clearly known. Recombinant DNA technology is used to investigate the structure of the genes for producing variable surface glycoproteins, the mechanism of cell membrane binding, and the selection and expression of one of the codes. In addition to the four licensed medicines produced for the treatment of parasitic diseases, new drugs are being developed.</p>
<p>It is astonishing that this tiny window of invisible dimensions has such a huge potential opening to different branches of science. Many such exceptional and precise situations exist in the universe that may showcase contradicting mechanisms with general principles and procedures. Sometimes we may wonder why God creates such harmful parasites. Since we do not know the performance at every point of an entire ecosystem with our insufficient scientific knowledge, limited sensory organs and temporary observation, we tend to see any seemingly harmful being as futile and devoid of wisdom and immediately raise our voices in protest. However, with new discoveries in science, thousands of wise meanings may be extracted from a creature we generally take for granted.</p>
<h3>References</h3>
<p>Lori Peacock, Simon Cook, Vanessa Ferris, Mick Bailey, Wendy Gibson (2012): <em>The life cycle of Trypanosoma (Nannomonas) congolense in the tsetse fly, </em>Parasites &amp; Vectors, 5:109 www.parasitesandvectors.com/content/5/1/109.</p>
<p>Michael P Barrett, Richard J S Burchmore, August Stich, Julio O Lazzari, Alberto Carlos Frasch, Juan José Cazzulo, Sanjeev Krishna, (2003):<em> The Trypanosomiases</em>, <em>The Lancet</em>, Vol 362, November 1, Pages 1469-1475, www.thelancet.com.</p>
<p><a href="http://www.cdc.gov/dpdx/trypanosomiasisafrican/index.html">www.cdc.gov/dpdx/trypanosomiasisafrican/index.html</a></p>
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<td><img loading="lazy" decoding="async" class=" size-full wp-image-6804" src="https://fountainmagazine.com/wp-content/uploads/2020/01/image003-093.jpg" alt="" width="293" height="173" /></td>
<td> <img loading="lazy" decoding="async" class=" size-full wp-image-6805" src="https://fountainmagazine.com/wp-content/uploads/2020/01/image004-bb1.jpg" alt="" width="224" height="224" srcset="https://fountainmagazine.com/wp-content/uploads/2020/01/image004-bb1.jpg 224w, https://fountainmagazine.com/wp-content/uploads/2020/01/image004-bb1-150x150.jpg 150w" sizes="auto, (max-width: 224px) 100vw, 224px" /></td>
<td><img loading="lazy" decoding="async" class=" size-full wp-image-6806" src="https://fountainmagazine.com/wp-content/uploads/2020/01/image005-867.jpg" alt="" width="276" height="183" /></td>
<td><img loading="lazy" decoding="async" class=" size-full wp-image-6807" src="https://fountainmagazine.com/wp-content/uploads/2020/01/image006-c1d.jpg" alt="Trypanosomes" width="276" height="183" /></td>
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<td><img loading="lazy" decoding="async" class=" size-full wp-image-6808" src="https://fountainmagazine.com/wp-content/uploads/2020/01/image007-fcb.jpg" alt="Trypanosomes" width="259" height="195" /></td>
<td><img loading="lazy" decoding="async" class=" size-full wp-image-6809" src="https://fountainmagazine.com/wp-content/uploads/2020/01/image008-7ee.jpg" alt="" width="263" height="192" /></td>
<td><img loading="lazy" decoding="async" class=" size-full wp-image-6810" src="https://fountainmagazine.com/wp-content/uploads/2020/01/image009-438.jpg" alt="" width="242" height="208" /></td>
<td><img loading="lazy" decoding="async" class=" size-full wp-image-6811" src="https://fountainmagazine.com/wp-content/uploads/2020/01/image010-85c.jpg" alt="" width="270" height="186" /></td>
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		<title>Mother’s Milk: An Essential Gold Standard for Our Babies</title>
		<link>https://fountainmagazine.com/all-issues/2019/issue-132-nov-dec-2019/mothers-milk-an-essential-gold-standard-for-our-babies/</link>
		
		<dc:creator><![CDATA[The Fountain]]></dc:creator>
		<pubDate>Fri, 01 Nov 2019 16:25:39 +0000</pubDate>
				<category><![CDATA[Issue 132 (Nov - Dec 2019)]]></category>
		<category><![CDATA[asthma]]></category>
		<category><![CDATA[babies]]></category>
		<category><![CDATA[baby’s]]></category>
		<category><![CDATA[birth]]></category>
		<category><![CDATA[breast]]></category>
		<category><![CDATA[breastfeeding]]></category>
		<category><![CDATA[development]]></category>
		<category><![CDATA[diseases]]></category>
		<category><![CDATA[foods]]></category>
		<category><![CDATA[health]]></category>
		<category><![CDATA[immune]]></category>
		<category><![CDATA[infants]]></category>
		<category><![CDATA[infections]]></category>
		<category><![CDATA[milk]]></category>
		<category><![CDATA[months]]></category>
		<category><![CDATA[mother]]></category>
		<category><![CDATA[respiratory]]></category>
		<category><![CDATA[risk]]></category>
		<category><![CDATA[Science]]></category>
		<category><![CDATA[studies]]></category>
		<category><![CDATA[system]]></category>
		<guid isPermaLink="false">http://107.21.79.195/all-issues/2019/issue-132-nov-dec-2019/mothers-milk-an-essential-gold-standard-for-our-babies/</guid>

					<description><![CDATA[To this day, natural breast milk is still regarded as the best nutritional choice for babies. Recent research on stem cells, genetics, and epigenetics [1] from the last three decades, along with information obtained from studies about childhood and youth and testimonials from organizations that guide health policies worldwide, all support this claim. Modern medicine [&#8230;]]]></description>
										<content:encoded><![CDATA[<p><img loading="lazy" decoding="async" class=" size-full wp-image-6795" src="https://fountainmagazine.com/wp-content/uploads/2019/11/10a-618.png" alt="Mother’s Milk: An Essential Gold Standard for Our Babies" width="1920" height="1200" srcset="https://fountainmagazine.com/wp-content/uploads/2019/11/10a-618.png 1920w, https://fountainmagazine.com/wp-content/uploads/2019/11/10a-618-300x188.png 300w, https://fountainmagazine.com/wp-content/uploads/2019/11/10a-618-1024x640.png 1024w, https://fountainmagazine.com/wp-content/uploads/2019/11/10a-618-768x480.png 768w, https://fountainmagazine.com/wp-content/uploads/2019/11/10a-618-1536x960.png 1536w" sizes="auto, (max-width: 1920px) 100vw, 1920px" /></p>
<p>To this day, natural breast milk is still regarded as the best nutritional choice for babies. Recent research on stem cells, genetics, and epigenetics [1] from the last three decades, along with information obtained from studies about childhood and youth and testimonials from organizations that guide health policies worldwide, all support this claim. Modern medicine agrees that breastfeeding is the healthiest, most inexpensive, highest quality, and most appropriate choice for protecting both a mother and baby’s health [2]. The World Health Organization holds breastfeeding as an essential gold standard for the immunological development of a child, starting from the first six months to two years of age [3].</p>
<p>Breastfeeding has many benefits. It strengthens the emotional bond between the mother and her baby. It helps ensure that the baby grows in a healthy manner, by establishing its first feeling of trust; positively effects the baby’s intelligence level; and helps bolster the baby’s immune system.</p>
<p>One of the most studied issues in recent studies is the effect of breast milk on respiratory diseases such as asthma. The effects of breastfeeding on asthma, allergic diseases, and respiratory infections has been a topic of concern for the medical world for at least the last 80 years. Recent studies agree that breast milk has a preventive role against lower respiratory tract infections in infancy (0–2 years). However, there are some complications in these studies. Given the challenges in patient standardization, only food-allergy studies can be standardized. Due to the complexity of the environmental and genetic factors that trigger allergies, it should be considered normal that the effect of breast milk has not yet been fully established to protect against a wide range of allergic diseases, particularly asthma [4].</p>
<p>Asthma is the most common chronic disease in childhood and has a complex structure. It has been on the rise lately, and scientists are scrambling to figure out what is causing this increase as well as the best ways to combat the disease. Asthma can be caused by a wide variety of sources, such as genetics, smoking, microscopic ticks and mites in house dust, allergenics such as grass or pollen, obesity, urban life, air pollution, synthetic nutrition, and imbalance in intestinal flora [5]. In addition, premature birth, low birth weight, a young mother, and early exposure to respiratory infections are factors that increase the risk of asthma [6]. Consequently, it is difficult to independently measure the effect of a single determinant in asthma. In a significant study on 3,963 children in the Netherlands, children were breastfed for at least four months and then followed for up to eight years after birth. The outcomes of the study revealed that breast milk significantly reduced the risk of asthma, independent of other variables. It has been observed that the rate of chronic asthma development decreases as the breastfeeding duration increases [7].</p>
<p>Today, breast milk’s benefits have been proven in protecting babies from respiratory infections both early on and later in life. Breastfeeding provides an emergency line of defense against infectious diseases by helping infants whose immune systems are not yet developed enough to fight infections.</p>
<p>Breastfeeding facilitates a beneficial germ exchange between mothers and babies and helps to develop a strong immune system. Enzymes, hormones, bioactive molecules, and growth factors in breast milk are all extremely vital for babies. These crucial molecules help develop the baby’s immune system by interacting with the proximate elements. Thanks to numerous features in its ingredients, breast milk has a significant role in supporting the baby’s immune system with the development of appropriate microorganisms in the intestine. The strength of the microbial structure in the baby’s intestine depends on the way of delivery, diet, and the variety of foods consumed by the mother. This healthy structure in the intestines is essential for the development of the immune system and for building an increased tolerance to new foods that will be taken orally. In infancy, beneficial microbiota in the intestines starts to develop healthily by breastfeeding in the first four to six months.</p>
<p>A comparative study between the intestinal flora of infants fed with breast milk and formula milk showed that the diversity and density of the desired microorganisms increased in a shorter time and in sufficient amount in the breastfed infants. Today, increased hygiene standards have changed the intestinal flora of infants, especially in Western societies. This, however, has increased the risk of diseases such as asthma [8].</p>
<p>Cytokines (a group of proteins and peptides that allow cells to communicate with each other) in breast milk also serve the development and smooth functioning of the immune system and play an important role in protecting the baby against bacterial infections, wheezing, and allergies. Human milk, especially “first milk,” was found to contain more than 20 cytokines [9]. First milk arrives in the first few hours after birth as a miraculous gift to babies when they are most vulnerable to illnesses and helps to protect against diseases. Ig A antibodies in the first milk also protect against infectious diseases that are commonly experienced in early life, besides obesity, diabetes, and allergic diseases that may come later [10].</p>
<p>Infants fed with ready-made foods have lower amounts and types of bacteria in their intestines than those fed with breast milk, which can consequently increase the risk of eczema and asthma. The issue of delaying foods with high allergy potential, especially when switching to supplementary foods, is still being debated. Some researchers suggest that complementary foods should not be introduced to infants up to 12 months. However, the common opinion is that positive intestinal bacteria that develops with sustained breastfeeding can reduce the risk of allergies to additional foods. Another consensus is that the transition to supplementary foods should not be earlier than six months [11].</p>
<p>As breast milk is the most important food for newborns, mothers should diligently endeavor to complete the suggested period of breastfeeding. Breastfeeding, if continued until the age of two and especially in the first six months, is accepted by international pediatric authorities as the cornerstone of nutrition.</p>
<h3>Character formation and breast milk</h3>
<p>We are physically and emotionally affected by what we eat or drink. Based on this assumption, it can be argued that breastfeeding might also have an influence on the character formation of babies [12]. Although it has been determined that intelligence and brain development are influenced by the emergence or inhibition of some genetic characters in the baby by epigenetic means, no research based on long-term observations has been conducted. In any case, it would be wise for parents to provide the best food both for themselves and their babies. Inasmuch as they make sure the food is hygienic and natural, they should also be cautious that it is obtained through legitimate means. If, for any reason, the mother&#8217;s milk is not enough or is suspended, a milk-mother with necessary qualities may be contracted.</p>
<p>Breastfeeding for two years is prescribed in the Qur’an: “<em>Mothers are to suckle their children for two complete years</em>” (2:233). “<em>We have enjoined on human in respect with his parents: his mother bore him in strain upon strain, and his weaning was in two years</em>” (31:14). Likewise, the Prophet Muhammad, peace be upon him, speaking about his son Ibrahim, who died before he could turn two, said, <em>“He has a milk-mother in Paradise, she will suckle him for his remaining milk, (will complete the term of two years</em>).” (Muslim, Fadail, 63, 2316)</p>
<h3>References</h3>
<ol>
<li>The inherited and non-genetic changes which occur in the disclosure of genetic information i.e. gene expression, without any no change to the structure of DNA.</li>
<li>Ballard O, Morrow AL: Human milk composition: nutrients and bioactive factors. <em>Pediatr Clin North </em>Am, 2013; 60: 49–74.</li>
<li>World Health Organization Recommendations on Postnatal Care of the Mother and Newborn. Geneva, WHO, 2013.</li>
<li>Matheson M, Allen KJ, Tang MLK: Understanding the evidence for and against the role of breastfeeding in allergy prevention. <em>Clin Exp Allergy</em>, 2012; 42: 827–851.</li>
<li>Ding G, Ji R, Bao Y: Risk and protective factors for the development of childhood asthma. <em>Paediatr Resp Rev</em>, 2015; 16: 133–139.</li>
<li>Oddy WH, de Klerk NH, Sly PD, Holt PG: The effects of respiratory infections, atopy and breastfeeding on childhood asthma. <em>Eur Respir J</em>, 2002; 19: 899–905.</li>
<li>Scholtens S, Wijga AH, Brunekreef B, Kerkhof M, Hoekstra MO, Gerritsen J et al..: Breastfeeding, parental allergy and asthma in children followed for eight years: the PIAMA</li>
<li>birth cohort study. Thorax 2009; 64: 604–609.</li>
<li>Adlerberth I, Wold AE: Establishment of the gut microbiota in Western infants. <em>Acta Paediatr</em>, 2009; 98: 229–238.</li>
<li>Goldman AS, Rudloff HE: Are cytokines in human milk? <em>Adv Exp Med Biol</em>, 1991; 310: 93–97.</li>
<li>World Health Organization Recommendations on Postnatal Care of the Mother and Newborn. Geneva, WHO, 2013.</li>
<li>World Health Organization: Global Strategy for Infant and Young Child Feeding. Geneva, 2003.</li>
<li>Ibrahim Canan, <em> Peygamber’in Sunnetinde Terbiye</em>, Istanbul: Isik Yayinlari, 2014, pp. 95.</li>
</ol>
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		<title>Science Square (Issue 129)</title>
		<link>https://fountainmagazine.com/all-issues/2019/issue-1298-may-jun-2019/science-square-issue-129/</link>
		
		<dc:creator><![CDATA[The Fountain]]></dc:creator>
		<pubDate>Wed, 01 May 2019 23:35:15 +0000</pubDate>
				<category><![CDATA[Issue 129 (May - Jun 2019)]]></category>
		<category><![CDATA[Artificial photosynthesis]]></category>
		<category><![CDATA[brain]]></category>
		<category><![CDATA[ceiling]]></category>
		<category><![CDATA[co2]]></category>
		<category><![CDATA[efficient]]></category>
		<category><![CDATA[energy]]></category>
		<category><![CDATA[fuel]]></category>
		<category><![CDATA[gut]]></category>
		<category><![CDATA[immune]]></category>
		<category><![CDATA[intestines]]></category>
		<category><![CDATA[opa]]></category>
		<category><![CDATA[oral]]></category>
		<category><![CDATA[photosynthesis]]></category>
		<category><![CDATA[process]]></category>
		<category><![CDATA[reactions]]></category>
		<category><![CDATA[researchers]]></category>
		<category><![CDATA[responses]]></category>
		<category><![CDATA[Science]]></category>
		<category><![CDATA[Science Square]]></category>
		<category><![CDATA[scientists]]></category>
		<category><![CDATA[segments]]></category>
		<category><![CDATA[sense]]></category>
		<category><![CDATA[water]]></category>
		<guid isPermaLink="false">http://107.21.79.195/all-issues/2019/issue-1298-may-jun-2019/science-square-issue-129/</guid>

					<description><![CDATA[Artificial photosynthesis transforms CO2 into liquefiable fuels Yu and Jain. Plasmonic photosynthesis of C1–C3 hydrocarbons from carbon dioxide assisted by an ionic liquid. Nature Communications, May 2019. Scientists have recently established a reliable “artificial photosynthesis” paradigm to produce fuels from water, carbon dioxide, and visible light. With the help of sunlight, chemical reactions between water [&#8230;]]]></description>
										<content:encoded><![CDATA[<p><img loading="lazy" decoding="async" class=" size-full wp-image-6718" src="https://fountainmagazine.com/wp-content/uploads/2019/05/tech1-d31.jpg" alt="Science Square (Issue 129)" width="1920" height="1200" srcset="https://fountainmagazine.com/wp-content/uploads/2019/05/tech1-d31.jpg 1920w, https://fountainmagazine.com/wp-content/uploads/2019/05/tech1-d31-300x188.jpg 300w, https://fountainmagazine.com/wp-content/uploads/2019/05/tech1-d31-1024x640.jpg 1024w, https://fountainmagazine.com/wp-content/uploads/2019/05/tech1-d31-768x480.jpg 768w, https://fountainmagazine.com/wp-content/uploads/2019/05/tech1-d31-1536x960.jpg 1536w" sizes="auto, (max-width: 1920px) 100vw, 1920px" /></p>
<h3><strong>Artificial photosynthesis transforms CO<sub>2 </sub>into liquefiable fuels</strong></h3>
<p><u>Yu and Jain. Plasmonic photosynthesis of C1–C3 hydrocarbons from carbon dioxide assisted by an ionic liquid. Nature Communications, May 2019.</u></p>
<p>Scientists have recently established a reliable “artificial photosynthesis” paradigm to produce fuels from water, carbon dioxide, and visible light. With the help of sunlight, chemical reactions between water and CO<sub>2</sub> are catalyzed in plants to generate and store solar energy in the form of glucose. This process is called photosynthesis. In the new study, the researchers developed an artificial process that uses the same mechanisms of natural photosynthesis to convert CO<sub>2</sub> and water into liquid fuel by using electron-rich gold nanoparticles as a catalyst. Gold nanoparticles function in the same role as chlorophyll in natural photosynthesis in the absorbing of light and transferring electrons and protons to catalyze the chemical reactions between CO<sub>2</sub> and water. They are known to be efficient at absorbing light and do not break down or degrade like other metals. The energy stored in the bonds of the hydrocarbon fuel can be freed by the conventional method of combustion or by new-generation, environmentally-friendly power fuel cells, thus producing electrical current. By converting CO<sub>2 </sub>into more complex molecules like propane, green-energy technology is now one step closer to using excess CO<sub>2</sub> to store solar energy for use when the sun is not shining and in times of peak demand. While the development of this CO<sub>2</sub>-to-liquid fuel may be exciting for proponents of green-energy technology, the artificial photosynthesis process is nowhere near as efficient as it is in plants. New methods should be developed to increase the efficiency of the catalysts and downstream chemical reactions at much higher scales.</p>
<h3><strong>Brain area that watches for walls identified</strong></h3>
<p><u>Henriksson et al. Rapid Invariant Encoding of Scene Layout in Human OPA. Neuron, May 2019.</u></p>
<p>Neuroscientists have identified the part of the human brain whose duty is to help us perceive the barriers which define the navigable space around us, such as walls or ceilings, so that so we can avoid bumping into things and navigate safely through our environment. By way of vision we have an almost instant sense of where we are in space. Although this process feels effortless, it requires the coordinated activity of multiple brain regions and neurons working together to give us this sense of our surroundings. This process has remained unknown. But thanks to a new study, we are a step closer to solving the puzzle. Using cutting-edge brain-imaging technologies, researchers examined the mental responses of volunteers as they were shown images of various three-dimensional scenes. The images depicted a typical room with three walls, a ceiling, and a floor, but then were abruptly changed by the removal of a wall or a ceiling. By doing this repeatedly, the team could pinpoint how the participant’s brain encoded every scene. In the brain scans of the volunteers, one brain area called the occipital place area (OPA) clearly stood out. OPA activity represented the geometry of the scenes and activity patterns, reflected the presence or absence of each component, such as a ceiling or a wall, and projected a detailed picture of the overall configuration. Interestingly, OPA seemed to ignore the surface appearance of the various components such as colors or textures in order to focus only on the geometric patterns. The OPA managed to perform all the necessary computations needed to get a sense of a room&#8217;s layout extremely fast – in just 100 milliseconds. In the future, the research team plans to incorporate virtual reality technology to create more realistic 3D environments for participants to experience, hopefully achieving much deeper insights into how our brains process and makes sense of the visual information.</p>
<h3><strong>Gut segments are organized by function</strong></h3>
<p><u>Esterházy D. et al. Compartmentalized gut lymph node drainage dictates adaptive immune responses. Nature, April 2019.</u></p>
<p>As food enters our intestine, it goes through a windy and lengthy journey. A new study provides new insights into how our intestines maximize nutrient uptake while protecting the body from potentially dangerous invading microbes. At first glance, the intestines appear to have a uniform tissue structure. But when scientists looked at them closer, they found that our food-processing canal seems to consist of multiple compartments that pace the immune system&#8217;s reactions to the food passing through. Scientists uncovered these functional intestine segments in mice when they examined the intestinal structures called gut draining lymph nodes, which orchestrate immune responses. The researchers found that nodes in different parts of the intestines had different cell composition, and they saw different immune responses between segments when they challenged the mice with a pathogen. They observed less aggressive defenses in the first segments where nutrients are absorbed, and more forceful responses at the end, where pathogens are eliminated. Researchers plan to exploit these immunological differences between the gut segments for treating gastrointestinal disorders. For example, by targeting immune-suppressing drugs to the specific gut segment where they&#8217;ll have the most effect, it might be possible to dampen their side-effects. The spectrum of immune responses along the intestines could also be used to make new and better oral vaccines. Thus far, scientists&#8217; efforts to design oral vaccines have been hampered by the difficulty of generating a robust immune response; it is possible that the muted immune response at the beginning of the intestines might be part of the reason why oral vaccines tend to be less effective than injections. Thus, targeting the distant end of the intestine might be much more efficient way of inducing the immune response required.</p>
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		<title>Science Square (Issue 104)</title>
		<link>https://fountainmagazine.com/all-issues/2015/issue-104-march-april-2015/science-square-march-april-2015/</link>
		
		<dc:creator><![CDATA[The Fountain]]></dc:creator>
		<pubDate>Sun, 01 Mar 2015 00:00:00 +0000</pubDate>
				<category><![CDATA[Issue 104 (March - April 2015)]]></category>
		<category><![CDATA[brain]]></category>
		<category><![CDATA[cancer]]></category>
		<category><![CDATA[cells]]></category>
		<category><![CDATA[cortex]]></category>
		<category><![CDATA[drought]]></category>
		<category><![CDATA[engineered]]></category>
		<category><![CDATA[immune]]></category>
		<category><![CDATA[mandipropamid]]></category>
		<category><![CDATA[plants]]></category>
		<category><![CDATA[researchers]]></category>
		<category><![CDATA[scaffold]]></category>
		<category><![CDATA[Science Square]]></category>
		<category><![CDATA[scientists]]></category>
		<category><![CDATA[smokers]]></category>
		<category><![CDATA[smoking]]></category>
		<category><![CDATA[study]]></category>
		<category><![CDATA[system]]></category>
		<category><![CDATA[vaccine]]></category>
		<category><![CDATA[water]]></category>
		<guid isPermaLink="false">http://107.21.79.195/all-issues/2015/issue-104-march-april-2015/science-square-march-april-2015/</guid>

					<description><![CDATA[Plants Tricked Into Drought Tolerance Agrochemical control of plant water use via engineered abscisic acid receptorsPark et al. Nature, February 2015. A recent breakthrough study reported that scientists successfully engineered drought-tolerant plants by adding a new piece of DNA to their genomes. Crops and many types of plants are increasingly challenged by hostile environmental conditions [&#8230;]]]></description>
										<content:encoded><![CDATA[<h3>Plants Tricked Into Drought Tolerance</h3>
<p><u>Agrochemical control of plant water use via engineered abscisic acid receptors<br /></u><em>Park et al. Nature, February 2015.</em></p>
<p>A recent breakthrough study reported that scientists successfully engineered drought-tolerant plants by adding a new piece of DNA to their genomes. Crops and many types of plants are increasingly challenged by hostile environmental conditions such as globally warming temperatures and diminishing water sources. Plants have very small openings called “stomata” that let carbon dioxide in and oxygen out. Each stoma is surrounded by two guard cells that control opening and closing using osmotic pressure. During daytime, the stomata lets plants allow carbon dioxide in and oxygen out. Since the air around the leaves is often drier than inside, water molecules also move out through the stomata – a process called transpiration. Under the stress of drought, plants produce a hormone called abscisic acid (ABA). When ABA is released, it makes guard cells close the stomata and in turn keeps the plant from losing the water. Scientists previously thought that if they could spray ABA on a whole field, plants would survive a drought. However, since ABA is very expensive and highly sensitive to light, this strategy never became an option. Then, scientists decided to take the commonly used fungicide mandipropamid and genetically engineered the plants to respond to mandipropamid as if it were ABA. By adding a new piece of DNA into genomes, plants ended up having slightly different ABA receptors, which can be efficiently activated by mandipropamid.  Researchers tried this approach on two different plants: tomatoes and <em>Arabidopsis</em>. When mandipropamid was sprayed, genetically engineered plants stopped transpiration, and hence were able to survive for 12 days without water. The next challenge is to test this strategy in real world crops. This approach potentially opens new avenues for crop improvement that could highly benefit a growing world population.</p>
<h3>3D Vaccines to Cure the Cancer</h3>
<p><u>Injectable, spontaneously assembling, inorganic scaffolds modulate immune cells in vivo and increase vaccine efficacy<br /></u><em>Kim J et al. Nature Biotechnology, December 2014.</em></p>
<p>Cancer is a devastating disease.  The World Health Organization (WHO) predicts that global cancer incidence rates will grow by nearly 60% to 22 million cases per year over the next two decades. The effective cure for cancer has not been developed yet, mostly due to its ability to escape the body&#8217;s immune system. Unlike infectious reagents like bacteria and viruses, cancer cells are actually our own cells that are broken and misplaced; they cause trouble as they grow. Scientists have been trying hard to develop vaccines that activate the immune system to recognize tumor cells as foreign and attack them. In a recent study, scientists reported that they designed a “3D vaccine” to effectively provoke the immune system to fight cancer. The 3D vaccine is composed of many microsized, porous silica rods submersed in liquid, where any combination of tumor antigens and immune-stimulating reagents can be loaded into.  Once the 3D vaccine is injected under the skin, it forms into a dime-sized scaffold that creates an &#8220;infection-mimicking microenvironment.” The scaffold then attracts the dendritic cells that patrol the body for harmful pathogens. When the scaffold was tested in mice, it showed over a 90% survival rate in animals that would normally die from lymphoma within 25 days. Further analyses in mice showed that the 3D vaccine can recruit, house, and manipulate immune cells to initiate a powerful immune response against cancer. As much as the discovery is promising, one should keep in mind that much more evidence will be required to establish 3D vaccines as a feasible way of combating human cancer.</p>
<h3>Smoking Shrinks the Brain</h3>
<p><u>Cigarette smoking and thinning of the brain’s cortex<br /></u><em>Karama S et al. Molecular Psychiatry, February 2015.</em></p>
<p>Smoking is regarded as the single most preventable cause of disease, disability, and death. Past studies strongly linked smoking to cancer and lung diseases. A recent study now shows that smokers have a thinner brain cortex than non-smokers. The cortex is the outer brain layer in which critical cognitive functions such as memory, language, and perception take place. It is well known that the cortex becomes thinner with normal aging and cortical thinning is associated with cognitive decline and dementia. The study found that smoking accelerates this thinning process. Researchers analyzed brain MRI scans of 244 males and 260 females with an average age of 73, around half of whom were former or current smokers. Participants who had given up smoking for the longest time had a thicker cortex compared with those who had given up recently. Researchers cautiously suggest that the cortex might regain some thickness once smokers quit but the recovery is very slow and incomplete. For example, heavy smokers who had quit more than 25 years before still had a thinner cortex.</p>
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		<title>Science Square (Issue 91)</title>
		<link>https://fountainmagazine.com/all-issues/2013/issue-91-january-february-2013/science-square-issue-91/</link>
		
		<dc:creator><![CDATA[Louima Cunningham]]></dc:creator>
		<pubDate>Tue, 01 Jan 2013 00:00:00 +0000</pubDate>
				<category><![CDATA[Issue 91 (January - February 2013)]]></category>
		<category><![CDATA[bat]]></category>
		<category><![CDATA[bats]]></category>
		<category><![CDATA[cells]]></category>
		<category><![CDATA[cytokine]]></category>
		<category><![CDATA[damage]]></category>
		<category><![CDATA[diseases]]></category>
		<category><![CDATA[dna]]></category>
		<category><![CDATA[fly]]></category>
		<category><![CDATA[free]]></category>
		<category><![CDATA[genes]]></category>
		<category><![CDATA[immune]]></category>
		<category><![CDATA[infections]]></category>
		<category><![CDATA[inflammation]]></category>
		<category><![CDATA[mammals]]></category>
		<category><![CDATA[mechanism]]></category>
		<category><![CDATA[response]]></category>
		<category><![CDATA[Science Square]]></category>
		<category><![CDATA[sequences]]></category>
		<category><![CDATA[species]]></category>
		<category><![CDATA[storm]]></category>
		<category><![CDATA[toxic]]></category>
		<category><![CDATA[viruses]]></category>
		<guid isPermaLink="false">http://107.21.79.195/all-issues/2013/issue-91-january-february-2013/science-square-issue-91/</guid>

					<description><![CDATA[Bats are the only mammals that are able to fly and they make up almost one quarter of all mammal species on earth. These amazing creatures are free from most diseases and live exceptionally longer when compared to other mammals of similar size. Scientists recently analyzed the DNA sequences of two different bat species, the [&#8230;]]]></description>
										<content:encoded><![CDATA[<p>Bats are the only mammals that are able to fly and they make up almost one quarter of all mammal species on earth. These amazing creatures are free from most diseases and live exceptionally longer when compared to other mammals of similar size. Scientists recently analyzed the DNA sequences of two different bat species, the Black Flying Fox and the David’s Myotis, to get an insight into the disease-resistance and longevity of bats. Bats are known to carry many deadly viruses including Ebola and SARS, but interestingly they never develop diseases from these viruses. Analysis of DNA sequences of two distant bat species revealed that bats were missing cytokine storm genes that trigger extreme and fatal immune reactions to some infections in other organisms. Cytokine storms are often triggered by the host’s immune system in response to certain infections and they end up not only killing the infecting viruses but also the organism’s own cells. Since bats don’t have the cytokine storm mechanism, they seem to handle many infections or diseases more rapidly and efficiently with a depressed inflammation response.</p>
<p>These findings might help researchers to design more effective drugs for various human infections by focusing on the minimization of the inflammation. Moreover, bats are capable of sustained long flights, as some bat species can fly more than 1,000 km in a single night. With such intense physical activity, cells often produce high levels of toxic (free radicals) that would usually damage DNA sequence.</p>
<p>This study also found that bats are equipped with a highly functional set of genes that mediates DNA repair in response to DNA damage, thus bats are protected from toxic cellular waste with this advanced mechanism. Aging, cancer and infectious diseases are the three major issues medicine is facing today and biological abilities granted to bats seem to provide important clues for us to discover new ways to combat these big health problems</p>
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		<title>Science Square (Issue 89)</title>
		<link>https://fountainmagazine.com/all-issues/2012/issue-89-september-october-2012/science-square-issue-89/</link>
		
		<dc:creator><![CDATA[The Fountain]]></dc:creator>
		<pubDate>Sat, 01 Sep 2012 00:00:00 +0000</pubDate>
				<category><![CDATA[Issue 89 (September - October 2012)]]></category>
		<category><![CDATA[airborne]]></category>
		<category><![CDATA[aizenberg]]></category>
		<category><![CDATA[bacteria]]></category>
		<category><![CDATA[bird]]></category>
		<category><![CDATA[flora]]></category>
		<category><![CDATA[flu]]></category>
		<category><![CDATA[Flu virus]]></category>
		<category><![CDATA[Frosty freezers]]></category>
		<category><![CDATA[human]]></category>
		<category><![CDATA[immune]]></category>
		<category><![CDATA[mice]]></category>
		<category><![CDATA[microbial]]></category>
		<category><![CDATA[pandemic]]></category>
		<category><![CDATA[plant]]></category>
		<category><![CDATA[received]]></category>
		<category><![CDATA[Science]]></category>
		<category><![CDATA[Science Square]]></category>
		<category><![CDATA[slippery]]></category>
		<category><![CDATA[surface]]></category>
		<category><![CDATA[surfaces]]></category>
		<category><![CDATA[virus]]></category>
		<category><![CDATA[viruses]]></category>
		<guid isPermaLink="false">http://107.21.79.195/all-issues/2012/issue-89-september-october-2012/science-square-issue-89/</guid>

					<description><![CDATA[1- Frosty freezers no more Original article: Kim P. et al, ACS Nano (2012, online ahead of print) Frost formation on aircrafts at high altitudes poses major safety threats and high-maintenance costs. Now, Joanna Aizenberg with her research team present a solution in their recent publication reporting on outstanding capabilities of a surface coating to [&#8230;]]]></description>
										<content:encoded><![CDATA[<h3><b>1- Frosty freezers no more</b></h3>
<p><em>Original article: Kim P. et al, ACS Nano (2012, online ahead of print)</em></p>
<p>Frost formation on aircrafts at high altitudes poses major safety threats and high-maintenance costs. Now, Joanna Aizenberg with her research team present a solution in their recent publication reporting on outstanding capabilities of a surface coating to prevent frost formation on metal surfaces. The technology called SLIPS (Slippery, Liquid-Infused Porous Surfaces) was inspired by the slippery surface of the carnivorous pitcher plant, which enables the plant to capture insects. &#8220;Some of the most extreme examples in biology can provide the most amazing and unexpected ideas&#8230;&#8221; says Aizenberg, who is a professor at the Wyss Institute for Biologically Inspired Engineering at Harvard University. Rendering surfaces slippery is not new to scientists, and the earlier inspirations also came from biology. Mimicking the surface of the leaf of another plant (Nelumbo nucifera, or commonly known as the Lotus plant), scientists have been successful in fabricating surface coatings that would repel water-based dirt, but Lotus-inspired coatings failed for oily substances. On the other hand, Aizenberg&#8217;s SLIPS technology offers a single solution for repelling any type of accumulated unwanted material. The pitcher plant thus offers a solution that virtually proves to be the &#8220;silver bullet&#8221; in generating non-sticky coatings as described again in Aizenberg&#8217;s own words: &#8220;In following its example, we should be able to develop a platform that works for almost any sticky problem, no matter how seemingly unrelated, whether it&#8217;s ice accumulation, bacterial attachment, environmental contamination, clogging of pipes, marine biofouling, or graffiti, rather than having to come up with a host of individual solutions.&#8221; Thanks to the wondrous design in the pitcher plant, it looks like doctors will be delivered from replacing bacteria-contaminated arterial stents, and we can all give a kiss goodbye to frosty freezers.</p>
<h3><b>2- Airborne bird flu virus possesses a great risk</b></h3>
<p><em>Original articles: Herfst S. et al, Science 336, 1534 &amp; Russell C.A. et al, Science 336, 1541.</em></p>
<p>Science magazine recently published a special issue (June 22, 2012 issue) on the H5N1 infection (a.k.a. bird flu) with two reports revealing the pandemic (a disease prevalent throughout an entire country, continent, or the whole world, such as AIDS) potential of bird flu. Bird flu virus has so far killed millions of birds and many more millions of birds were culled to stop the propagation of the virus. Thankfully, this virus has not yet caused a pandemic in humans mainly because of its inability to spread easily among humans. One mechanism that makes viruses highly contagious is their ability to spread through air, such as through the nose and mouths of people when they cough and sneeze. Viruses that spread through air are called airborne viruses. One big difference between bird flu virus and the more recent swine flu virus (H1N1) was that swine flu is an airborne virus and bird flu is not, and therefore swine flu caused a mild pandemic in 2009. As reported in these studies, researchers identified several genetic mutations that will cause bird flu virus to become airborne. Viruses undergo mutations all the time and unfortunately some of these identified mutations have already started taking place in circulating virus strains. This poses a great risk. One important aspect of these reports is that they were written about a year ago but withheld since now, because of concerns about misuse of this information to pose a threat to humanity. Now that the information is public, our hope is that it will be used to monitor the virus closely and be prepared if bird flu virus transforms into an airborne virus.</p>
<h3><b>3- Not all bacteria are the same after all</b></h3>
<p><em>Original article: Chung H. et al, Cell 149, 1578 (2012)</em></p>
<p>The impact of our own bacteria on human life has been intensely researched in recent years. One of the common ground is that humans acquire many useful bacteria over their existence. However, this microbial flora constantly changes as the conditions do. Therefore, the real number of 500 to 1000 microbial species inhabiting mammals is anybody&#8217;s guess. Nonetheless, some scientists did not shy away predicting a connection between having a specific microbial flora to avoid certain diseases. A recent article by Chung et al presented an interesting clue why constant change in microbial flora, especially if that leads to a loss of important bacteria, may be linked to the increase in human autoimmune disorders. &#8220;For every cell in your body that is you, that contains your specific genetic information, there are approximately nine foreign bacterial cells, primarily in your digestive tract and even on your skin,&#8221; said Dennis Kasper, professor at Harvard Medical School and senior author on the paper. To address the question if microbial affects immune system development, authors compared two groups of mice, both of which had never had bacteria in their intestine before the experiment. One group of mice received mice microbial flora and the other received human microbial flora. Both groups had similar number of bacteria in their digestive tracks. However, authors observed a stark contrast between the two groups in terms of the level of immune cells in intestinal tissues. Mice that received human flora had surprisingly low number of immune cells compared to the mice that received mouse flora, which is native to mice. When this experiment was repeated with rat microbial flora, astonishingly, similar immune deficiency was observed. &#8220;I was very surprised to see that. I would have expected more of a half-way response,&#8221; Chung said, considering how closely rats and mice are related. The study points out that we really need to preserve our own microbial flora that has been tailored for us. Disrupting this balance by means of current antibiotics overuse may have detrimental effects in the future.</p>
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		<title>Science Square (Issue 87)</title>
		<link>https://fountainmagazine.com/all-issues/2012/issue-87-may-june-2012/science-square-issue-87/</link>
		
		<dc:creator><![CDATA[The Fountain]]></dc:creator>
		<pubDate>Tue, 01 May 2012 00:00:00 +0000</pubDate>
				<category><![CDATA[Issue 87 (May - June 2012)]]></category>
		<category><![CDATA[age]]></category>
		<category><![CDATA[article]]></category>
		<category><![CDATA[babies]]></category>
		<category><![CDATA[baby]]></category>
		<category><![CDATA[body]]></category>
		<category><![CDATA[dinosaurs]]></category>
		<category><![CDATA[exposure]]></category>
		<category><![CDATA[immune]]></category>
		<category><![CDATA[jurassic park]]></category>
		<category><![CDATA[mice]]></category>
		<category><![CDATA[microbes]]></category>
		<category><![CDATA[months]]></category>
		<category><![CDATA[original]]></category>
		<category><![CDATA[particles]]></category>
		<category><![CDATA[researchers]]></category>
		<category><![CDATA[Science Square]]></category>
		<category><![CDATA[screen]]></category>
		<category><![CDATA[star]]></category>
		<category><![CDATA[Stardust]]></category>
		<category><![CDATA[stars]]></category>
		<category><![CDATA[study]]></category>
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					<description><![CDATA[1- Early exposure to microbes shows benefit that is life long Original article: Olzsak T. et al, Science (2012, epub ahead of print) It has been known by epidemiologists that people who grew up in farms are less likely to acquire immune diseases such as asthma, allergies, inflammatory bowel disease and multiple sclerosis when compared [&#8230;]]]></description>
										<content:encoded><![CDATA[<h3><b><b>1- Early exposure to microbes shows benefit that is life long</b></b></h3>
<p><em>Original article: Olzsak T. et al, Science (2012, epub ahead of print)</em></p>
<p>It has been known by epidemiologists that people who grew up in farms are less likely to acquire immune diseases such as asthma, allergies, inflammatory bowel disease and multiple sclerosis when compared to people living in cities. Such observations have been the roots of &#8220;hygiene hypothesis,&#8221; which essentially points out the beneficial effects of being exposed to infectious agents. Supporting this theory, a recent study at Harvard Medical School showed that exposure to symbiotic bacteria has a long lasting beneficial effect on the immune system development. &#8220;We as a species are not exposed to the same germs that we were exposed to in the past,&#8221; said the co-author Dennis Kasper, a microbiologist at Harvard Medical School in Boston. In this study, published in Science, the researchers compared germ-free mice to mice with normal bacterial flora. Germ-free mice showed significantly higher levels of invariant natural killer T (iNKT) cells in their colons and lungs. &#8220;We made the serendipitous observation that these cells were dramatically enriched in the lung and colon in mice that lacked any microbes,&#8221; said the co-author Richard Blumberg, the chief of gastroenterology at Brigham and Woman&#8217;s Hospital in Boston. Body&#8217;s own production of elevated iNKT cells correlated with higher susceptibility to inflammatory bowel disease and allergic asthma in germ-free mice. Most strikingly, the study showed that exposure to these bacteria in late age did not lower the susceptibility to these immune diseases, indicating that the bacterial exposure needs to be early in life to boost the immune system. After all, broad-spectrum antibiotics for babies may not be such a good idea.</p>
<h3><b>2- Giant chickens of Jurassic Park</b></h3>
<p><em>Original article: Xu X. et al, Nature 484, 92 (2012)</em></p>
<p>Many of us undoubtedly learned a lot about dinosaurs from the famous Sci-fi movie Jurassic Park, but who would have imagined that some gigantic feathered dinosaurs would be running along with our favorite monster T-Rex? Paleontologists have recently made an incredible discovery in Liaoning Province of China. They found a set of perfectly preserved fossils that belong to a previously unknown species of dinosaurs. These 125-million-year-old feathered giant dinosaurs represent the largest feathered animal species ever lived on earth. The adult one is predicted to be at least 9 meters (30 feet) long with a weight of 1400 kg (~3000 pounds), which is approximately 40 times bigger than the Beipiaosaurus, largest known feathered dinosaur. New gigantic feathered dinosaurs are given a Chinese-Latin name Yutyrannus huali meaning a &#8220;beautiful feathered tyrant.&#8221; Simple filament like structures as well as the relatively small sizes of feathers seem more similar to feathers from a baby chick than the plumes of an adult bird, suggesting that Yutyrannus used feathers not for flying but for body temperature insulation, perhaps under the harsh climate conditions of that age. Paleontologists are really excited to see that how much more we have learned about dinosaurs over last 15 years and they predict that many different feathered meat-eating dinosaurs lived before and they are still yet to be discovered.</p>
<h3><b>3- Stardust mystery revealed</b></h3>
<p><em>Original article: Norris B.R.M. et al, Nature 484, 220 (2012)</em></p>
<p>Heavy elements are formed in the cores of stars and are crucial in formation of celestial structures like our earth. When an intermediate-mass star dies, it triggers a cosmic sandstorm that lasts thousands of years ejecting more than half of its mass into space. Our Sun is expected to go into a similar phase in around 5 billion years. Scientists observed these sandstorms for years but it was a mystery how these particles found could leave the vicinity of the stars and find their way into interstellar space. Computer simulations hinted that these sand-like particles could not be that small, otherwise they would be evaporated by the immense heat of the dying star. Scientists using the Very Large Telescope in Chile had a chance to explore these stars in a greater detail and discovered that the size of these particles is around a micrometer. This size might seem very small to us but for these particles, it is large enough to behave like mirrors for the light rays coming out of the star instead of absorbing them. Since light also behaves like a particle, the momentum transferred by this reflection helps particles to accelerate to the speeds like 10km/second. As the lead author of the study, Barnaby Norris from University of Sydney says: &#8220;The dust grains are like lots of little sails catching the wind, or in this case, starlight.&#8221; The material that comes out of the stars is recycled during the formation of new stellar objects like our old planet.</p>
<h3><b>4- Babies understand more than we think</b></h3>
<p><em>Original article: Bergelsona, E. &amp; Swingley, D., P.N.A.S. 109, 3252 (2012)</em></p>
<p>Most babies do not say a meaningful word until they are a year old. It was not clear whether they knew the meaning of the words prior to the speaking age. It is easy to ask the question on whether the babies understand words but it is hard to scientifically measure it. The researchers from the University of Pennsylvania devised an ingenious experiment to test the hypothesis whether the 6-9 months babies understood the common words. During the experiment babies sat on their parents&#8217; lap in front of a computer while some images of body parts or foods were shown on the screen. The parents were given instructions through headphones about what to say to the baby about the image on the screen. Babies were monitored by an eye-tracking device to measure their attention being directed to screen. The researchers designed a control environment by pairing a body part and a food item. For instance, if a banana and some hair were shown on the screen, the researchers measured the time that the baby fixated on the banana when the parent instructed the child to look at the banana versus when the parent instructed the baby to look at the hair. 33 infants of ages 6 to 9 months and 50 toddlers of ages 10 to 20 months were recruited for this study. The study convincingly showed that the babies fixated longer on an object when they were instructed to do so. Moreover, as the age of the babies increased the period of fixation stayed pretty much constant until 14 months, but jumped dramatically afterwards. The reason behind the jump in 14 months begs further research. Now, the researchers want also to test the vocabulary of the babies and whether the babies also understand the abstract concepts.</p>
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		<title>Science Square (Issue 86)</title>
		<link>https://fountainmagazine.com/all-issues/2012/issue-86-march-april-2012/science-square-issue-86/</link>
		
		<dc:creator><![CDATA[The Fountain]]></dc:creator>
		<pubDate>Thu, 01 Mar 2012 00:00:00 +0000</pubDate>
				<category><![CDATA[Issue 86 (March - April 2012)]]></category>
		<category><![CDATA[bacteria]]></category>
		<category><![CDATA[body]]></category>
		<category><![CDATA[cells]]></category>
		<category><![CDATA[energy]]></category>
		<category><![CDATA[exercise]]></category>
		<category><![CDATA[food]]></category>
		<category><![CDATA[grass]]></category>
		<category><![CDATA[immune]]></category>
		<category><![CDATA[irisin]]></category>
		<category><![CDATA[researchers]]></category>
		<category><![CDATA[Science Square]]></category>
		<category><![CDATA[silk]]></category>
		<category><![CDATA[sources]]></category>
		<category><![CDATA[spider]]></category>
		<category><![CDATA[stress]]></category>
		<category><![CDATA[switch]]></category>
		<category><![CDATA[system]]></category>
		<category><![CDATA[vaccine]]></category>
		<category><![CDATA[vaccines]]></category>
		<category><![CDATA[waste]]></category>
		<category><![CDATA[web]]></category>
		<guid isPermaLink="false">http://107.21.79.195/all-issues/2012/issue-86-march-april-2012/science-square-issue-86/</guid>

					<description><![CDATA[1- Impressive Design and Strength of Spider Silk&#8217;s Web Original Article: Cranford, S.W. et al., Nature 482, 72 (2012). Spider silk has been a symbol of durability and strength, but the role the design of a web plays or contributes to the strength was unknown. Researchers from Massachusetts Institute of Technology discovered that the impressive [&#8230;]]]></description>
										<content:encoded><![CDATA[<h3><b>1- Impressive Design and Strength of Spider Silk&#8217;s Web</b></h3>
<p><em>Original Article: Cranford, S.W. et al., Nature 482, 72 (2012).</em></p>
<p>Spider silk has been a symbol of durability and strength, but the role the design of a web plays or contributes to the strength was unknown. Researchers from Massachusetts Institute of Technology discovered that the impressive design of web and the feature of silk allow spiders to build a super-strong web under different levels of stress. The response of spider silk subjected to load was studied. They studied webs of a variety of species, including European garden spiders and orb weavers, and combined their experiments with correlated web models. At low stress, silk threads soften and extend that result in retaining web structure. At high stress, the silk threads extend and the most stretched ones break. The strength of the silk and the geometry of the web allow only one or two threads being broken under strain. Therefore, the break in the web is minimized and prevents destruction of the whole web. The localized web damage can be repaired by the spider and therefore a requirement for rebuilding the web completely is eliminated. This study shows that spider silk web is very stable even under hurricane winds. This research gives an idea to engineers to build a system that will fail only at small parts of the system under certain stress. Therefore, the system will continue to work just after repairing the destroyed parts of the system. Otherwise, the whole system may be destroyed under potential load and will have to be rebuilt. For example, when a building is exposed to large mechanical stress such as an earthquake, it may be destroyed as a whole and become dysfunctional. Applications on such systems require further research in engineering to achieve structures as stable as a spider&#8217;s web.</p>
<h3><b>2- Benefits of Exercise Through a Protein</b></h3>
<p><em>Original article: Bostrom, P. et al., Nature 481, 463 (2012).</em></p>
<p>Exercise has a number of beneficial effects in human health such as increasing cardiovascular, respiratory and metabolic capacity. Scientists at Harvard Medical School have discovered a muscle hormone, Irisin, which may be responsible for the many beneficial effects of exercise. Irisin secreted from muscle after exercise and act on white adipose tissue that stores energy. Excessive amounts of white fat cells contribute to many pathologic effects of obesity and diabetes. Irisin, however, converts white fat into the more beneficial and metabolically active brown fat, which burns more calories and produce heat instead of energy. It helps to prevent excessive glucose and fatty acid accumulation in the body. The researchers demonstrated that mildly increased Irisin levels in the blood cause an increase in energy expenditure in mice with no changes in movement or food intake. It also reduces body weight and improves glucose tolerance and obesity induced insulin resistance. This research suggests that Irisin can be a new therapeutic target in human metabolic diseases treatment. Also it could help people lose weight and fight against obesity induced problems such as diabetes and hypertension.</p>
<h3><b>3- New Generation Vaccines with High Efficacy</b></h3>
<p><em>Original Article: Avci F.Y. et al., Nature Medicine 17, 1602 (December 2011).</em></p>
<p>Most pathogenic bacteria contain complex carbohydrate structures on their surfaces. These carbohydrates are called capsular polysaccharides. “Glycoconjugate” vaccines are prepared by chemical conjugation of capsular polysaccharides with proteins. This method is the standard design for many vaccines that protect us against common diseases such as pneumonia and meningitis. One drawback with these vaccines is their limited efficacy in populations such as the elderly, children and patients with compromised immune systems. Researchers at Harvard Medical School and Rockefeller University have designed and synthesized a vaccine that is about 100 times more potent than traditional vaccines available today. Until now, the scientific community believed that the body&#8217;s professional immune cells, called T-cells, were only able to recognize vaccine&#8217;s protein molecules to generate an immune response. However, after studying how glycoconjugate vaccines stimulate immune response, the researchers found that T-cells are also able to recognize the carbohydrate molecules. In a series of elegant experiments, they demonstrated that there is a repertoire of T-cells that can recognize the carbohydrate portion of a glycoconjugate vaccine, and that these T-cells stimulate antibody producing B-cells to generate high affinity antibodies against the carbohydrates. Based on the knowledge obtained from this mechanistic study, researchers have designed a new-generation glycoconjugate vaccine and showed that this new vaccine was about 100 times more immunogenic than a vaccine made by traditional methods.</p>
<h3><b>4- Producing Fuel from Waste with Bacteria</b></h3>
<p><em>Original Article: Bokinsky, G. et al., PNAS 108, 19949 (December 2011).</em></p>
<p>It turns out, the secret for alternative source for oil might be hidden in a very common bacterium and plant, E coli and switch grass. As the world&#8217;s natural resources are quickly exhausted by humans, new energy sources or alternative energy production methods are needed. One popular way for addressing this question is promoting biofuels. Most of the biofuel source is in ethanol form, often produced from sugar that is extracted from sugarcane and corn. However the consuming of main food sources for energy sources begs a question: What if one day feeding the machines with our food sources makes food scarce? Another concern is that many countries are not using ethanol as an energy source. All these led researchers to pursue another idea: Instead of using food sources as precursor for ethanol, non-food biomass or bio-waste can be converted to precursors for biofuels by utilizing the cellulose or hemicellulose as a starting material. Human body cannot digest cellulose. Hence, cellulose is a bio-waste, which can be broken down into sugar using a mixture of enzymes and subsequently can be used for gasoline production. The enzymes for this procedure can be produced by bacteria in massive amounts. To this end, researchers genetically engineered Ecoli bacteria to consume large amount of cellulose from switch grass and convert it to sugar. Scientists achieved to produce different precursors for different fuels, including gasoline, diesel or jet fuel with bacteria. These are big steps in turning bio-waste into fuels. Imagine one day your plane will be powered with a hay of switch grass and a bottle of bacteria. Next time when you fly over a field of switch grass, you might actually be seeing the next oil well.</p>
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		<title>Immune system at training in the gut</title>
		<link>https://fountainmagazine.com/all-issues/2011/issue-84-november-december-2011/immune-system-at-training-in-the-gut/</link>
		
		<dc:creator><![CDATA[The Fountain]]></dc:creator>
		<pubDate>Tue, 01 Nov 2011 00:00:00 +0000</pubDate>
				<category><![CDATA[Issue 84 (November - December 2011)]]></category>
		<category><![CDATA[animals]]></category>
		<category><![CDATA[bacteria]]></category>
		<category><![CDATA[brain]]></category>
		<category><![CDATA[cancer]]></category>
		<category><![CDATA[cell]]></category>
		<category><![CDATA[cells]]></category>
		<category><![CDATA[cyclin]]></category>
		<category><![CDATA[gut]]></category>
		<category><![CDATA[human]]></category>
		<category><![CDATA[immune]]></category>
		<category><![CDATA[Immune system]]></category>
		<category><![CDATA[levels]]></category>
		<category><![CDATA[life]]></category>
		<category><![CDATA[live]]></category>
		<category><![CDATA[Long life]]></category>
		<category><![CDATA[mole]]></category>
		<category><![CDATA[pathogens]]></category>
		<category><![CDATA[Perfect plastic]]></category>
		<category><![CDATA[plastic]]></category>
		<category><![CDATA[Science Square]]></category>
		<category><![CDATA[scientists]]></category>
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		<category><![CDATA[tregs]]></category>
		<guid isPermaLink="false">http://107.21.79.195/all-issues/2011/issue-84-november-december-2011/immune-system-at-training-in-the-gut/</guid>

					<description><![CDATA[1- Immune system at training in the gut Microbes, in particular bacteria, are associated with many diseases, being the deadliest pathogens along with viruses. But, this doesn&#8217;t mean that all bacteria are harmful. Indeed, most bacterial colonies that reside in our gut have mutualistic relationship with humans. Our intestines carry approximately ten times more bacteria [&#8230;]]]></description>
										<content:encoded><![CDATA[<h3>1- Immune system at training in the gut</h3>
<p>Microbes, in particular bacteria, are associated with many diseases, being the deadliest pathogens along with viruses. But, this doesn&#8217;t mean that all bacteria are harmful. Indeed, most bacterial colonies that reside in our gut have mutualistic relationship with humans. Our intestines carry approximately ten times more bacteria than the total number of cells in human body. This vast number of bacteria residing in our intestines are not only harmless, but they are also beneficial for us in many ways, by digesting food to supply energy for the body, by outcompeting the disease-causing bacteria in the intestines, and by producing vitamins and hormones. This study brings a new dimension to our understanding of the interactions between the host immune system with the gut microflora. The main components of immune system are the T cells that can recognize the pathogens. Each T cell recognizes one particular pathogen and distinguishes self-cells from the pathogens. In the thymus, T cells that recognize self-molecules are either eliminated or transformed into a special category of T-cells called regulatory T cells (Tregs), whose job is to maintain tolerance towards self-antigens. Lathrop and colleagues demonstrated for the first time that naïve T cells are developed into Tregs in the gut upon encounter of commensal gut bacteria. What is striking is that these Tregs responded to the bacterial antigens, unlike the thymus originated Tregs that were generated by self-antigen recognition. These data suggest that gut bacteria train host&#8217;s immune system to be silent against themselves and act only against invading pathogens. Mechanisms involved in distinguishing harmful vs. beneficial bacteria by the immune system may provide new ways of tackling with bacterial diseases.</p>
<h3>2- Cancer meets memory</h3>
<p><em>Original Article: Odajima, J. et al., Developmental Cell 21, 655 (2011).</em></p>
<p>The recent discovery in the field of neuroscience reminded us the phrase &#8220;context is everything.&#8221; A study conducted by the scientists of Dana-Farber Cancer Institute and Harvard Medical School addressed somewhat contradictive observation that why human brain has high levels of cyclin E protein, a well-known culprit in many cancers. Cyclin E protein plays an important role in cell cycle where it helps to regulate the timing and the frequency of cell division in normally growing cells. However, overexpression of cyclin E has been associated with uncontrolled cell growth in various cancer types. It is surprising that the human brain, which has a group of non-dividing cells, also express cyclin E at high levels. The study showed that when cyclin E deficient mice were analyzed, there was a serious defect in the formation of nerve connections as well as the formation of memory. &#8220;It is overexpressed in many different cancers, but it also is expressed in high levels in the human brain. We have found that cyclin E is needed for memory formation and is a very important player,&#8221; said senior author Peter Sicinski, PhD, a cancer biologist at Dana-Farber. The study showed that cyclin E achieves its functions in the brain by binding to Cdk5 enzyme whose activity is associated with Alzheimer&#8217;s disease. &#8220;There is good evidence that hyperactivity of Cdk5 contributes to Alzheimer&#8217;s disease and inhibiting this enzyme can ameliorate symptoms in animals,&#8221; said Sicinski. &#8220;Manipulating cyclin E levels might be another way to accomplish this,&#8221; he added.</p>
<h3>3- Designing perfect plastic </h3>
<p><em>Original Article: Read, D.J. et al., Science 333, 1871 (2011).</em></p>
<p>Plastic is used everywhere in our daily lives. Up until now, production of different types of plastic was done by trial and error. Only a small fraction of these trials give rise to a usable product. After ten years of hard work, scientists have now developed a computer program that can predict properties of plastic without actually manufacturing it. The program has two parts. The first part can predict how a specific polymer will flow based on the connections between the macromolecules that make up the polymer. The second part predicts the shape of these macromolecules when they are made at a chemical level. Using this code, one can effectively construct a recipe book for plastic. This will make it possible to design plastic that can better handle a specific job. It will also be possible to make plastic out of renewable materials instead of oil based materials which will be easy to recycle.</p>
<h3>4- The key to long life?</h3>
<p><em>Original Article: Kim, E.B. et al., Nature (published online before print, 2011).</em></p>
<p>Who would want to live a long life at the cost of looking ugly? One type of rodent species, naked mole rat, seems to have said &#8220;yes&#8221; to this intricate question. While an average rodent, a house mice or a rat living on streets, can live up to 4 years, naked mole rats can live up to 30 years. Mole rats are hairless, buck-toothed and almost blind rodents that are only found in dry sections of the Horn of Africa. They live in underground colonies with a social structure similar to ant colonies. There is a queen rat that chooses to mate with only few males, and rest of the colony takes the big responsibility of maintaining and protecting the colony. Scientists have always been puzzled with the extraordinary life span of these exotic animals and they finally generated the complete gene map of these intriguing animals. A quick look of the genomic map revealed that many genes associated with vision, circadian rhythms, perception of pain and perception of bitter tastes seem to be completely turned-off. Perhaps, these specific modifications allow animals to tolerate harsh living conditions and help them to adapt a lifestyle which lacks so-called the luxuries and expectations of a normal animal. Scientists believe that comprehensive analyses of naked mole&#8217;s genetic map might shed light on fundamental cellular mechanisms that are disrupted in aging and aging-related diseases.</p>
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