His exalted name, “Light,” touches the darkness
and everywhere is filled with light.
The letters written from a brilliant world
are revealed to the hearts;
Then the Divine command,
“Read in the name of your Lord!”
descends and becomes our intentions.

We look around the Earth and believe that we start to sail into the dark upon reaching the depths of the skies, the land, and the oceans. But if we look with care, we may notice that the inhabitants of those places often inform us of the beauties they are created with.

The depths of the oceans, especially, are where what we see leave us amazed. From microscopic bacteria to giant squids, and from tiny lighted jellyfish to spiny skin, many creatures, from ascidians to some sharks and stingrays, turn on their lights, literally, illuminating the darkness of the deep sea. This biological light-producing process in the body of some animals is called bioluminescence. It is astounding that these creatures can emit biological light with no change in their body temperature. Normally, light is formed by emitting heat. This basic principle applies to some of the most common sources of light that we know of, such as campfires and electrical lightbulbs.

A mechanism that produces light without heat has been created in some insects living under the sea as well as those on land. The basis of biological light production is generally the oxidation of luciferin, i.e. its conversion to oxyluciferin. The enzyme necessary for this chemical reaction to occur is luciferase.

Most living creatures that can produce bioluminescence live in deep, dark areas of the world’s various seas and oceans. Some of the inhabitants of these depths emit strong blue (secondarily green) light at an average wavelength of 475 nm. An interesting note is that underwater life forms are often created with sensitivity to the wavelengths of blue-green lights mentioned above. In rare cases, there are also sea creatures that emit light in the yellow-red wavelength range.

Animals with the ability to emit light are also usually given excellent control mechanisms so that they can use their equipment as a weapon. They can turn their lights on and off in a flash and can utilize complex chemical and neurological mechanisms that provide functions such as adjusting the intensity, color, and direction of the light. Creatures that produce light underwater sometimes do not need to use the light in order to see where they are going. Instead, they tend to use these marvelous gifts in a variety of strategic ways. Some will try to attract the attention of their prey; others will attempt to ward off predators and aggressors; still others will use their lights to indicate that they are ready for reproduction. It is even possible for some creatures to utilize several of these functions at the same time.

Let us now examine some specific species and how they employ bioluminescence.

Light vomiting shrimp

One of the most interesting examples of bioluminescence in animals is the light-emitting deep-sea shrimp Acanthephyra purpurea. This shrimp will actually vomit light from its mouth as a last-ditch effort to deter predators. The intent is to disorient, confuse, and even temporarily blind other creatures, similar to the effect of a flashbang grenade, so that the shrimp can retreat into the dark. As a result of their research on the shrimps, marine biologist Edith Widder states that the chemical substances sprayed are not blue when they are in the body and that the blue light production occurs when the luciferin substance in the sprayed liquid comes into contact with the oxygen in water.

Loosejaw fish

There are at least 42 recorded families of bony fish that have bioluminescent properties. One of them is the Photostomias guernei, or the “loosejaw fish”. This fish has a remarkable organ that emits light on the sides of its eyes. These lights, which resemble the headlight lamps of our cars, are not constantly lit, in order to avoid waste. When hunting, the fish illuminates the way ahead with the light it produces, and it can turn these lights off when they are no longer needed. A wonderful feature of this organ is that, just like headlights, a highly reflective layer is created behind the main center of the light. The reason that the fish is able to turn the light off may be because its black velvety body is contrasted by the light color of the organ and would thus attract much unwanted attention.

Deep sea hatchetfish

Bioluminescent systems were also given to creatures in order to act as a means of camouflage. They work phenomenally for both hunting and survival in situations where blending in with the environment is paramount for catching prey or evading predators. In the depths of the underwater world, the silhouette of an animal bathing in light is an easily recognizable target. One of the best examples of this phenomenon is the deep-sea hatchetfish. The fish has been created with its eyes on top of its body and its mouth facing upwards, making it easier to hunt. It also emits bioluminescence from its abdomen to provide camouflage against more aggressive, larger fish that swim lower than itself. The color of the light emitted makes it difficult to recognize the fish from below as it perfectly matches the color intensity of the environment. In the meantime, if the sunlight that hits the sea is interrupted in any way, the fish will turn off its lights and the camouflage will continue.

Black dragonfish

Diversity in the light organs of the scaleless black dragonfish (Melanostomias bartonbeani)

This species of black dragonfish (Melanostomias bartonbeani) takes advantage of luminescence in a number of ways. An illuminated area next to the eyes is used to find prey and send signals to its mates. The black dragonfish’s chin also has an illuminated extension that dangles in the waves as bait for naive prey. In addition, a set of small organs of light arranged along its abdomen play a role in concealing its silhouette. Furthermore, light-emitting pocket-like structures surrounded by a gelatinous capsule embedded in the skin are used as alarm systems. The bioluminescent systems within this creature are immensely complex and beautiful, and when observed in detail reveal the dazzling splendor of the world that we live in.

Fish with 3 different types of illumination

The Northern Stoplight Loosejaw (Malacosteus niger) has three different types of light organs, the complex use of which cannot be possible without top engineering skills. The wide, drop-shaped, illuminated organ under its eyes emits a red light at a wavelength of 702 nm as if it knows the laws of optics under the sea. This red light is not visible to most deep-sea creatures, for it is quickly absorbed in water. Yet, with this red light this fish is able to have vision in a close proximity while remaining largely undetected. This is similar to infrared binoculars soldiers use for night vision without giving away their position. The loosejaw is thus a dangerous hunter that has an edge over its prey. There also exists a blue light-emitting oval section, behind the organ, that emits red light and is usually larger in males. A third light organ is round and smaller and is located between the eyes and the red-light organ.

Angler fish

The angler fish is one of the most iconic fish of the deep ocean due to its famous rod and bioluminescence. The angler fish does not actually produce its light on its own: the light is credited to bioluminescent symbiotic bacteria that inhabit the end of the rod on their forehead. This illuminated part, which resembles a worm-like bait, is very attractive to small fish. These fish are thus lured to the angler expecting a quick snack, but instead the angler swallows them whole with its massive mouth. While doing their task of helping the angler hunt small fish, the bacteria maintain a symbiotic relationship with the fish and also find an environment in which to proliferate. In this way, they form a good example of cooperation and solidarity. One may wonder: how can such a mutual agreement come into fruition between a fish and some bacteria which are deprived of a nervous system, mind, and consciousness?

One of the reasons that marine biologists are interested in light-emitting bacteria is the wide-lit regions called the “Milky Seas.” These can be observed in satellite images of Earth. Recently, satellites helped detect a bioluminescent area of roughly 5,946 sq. mi in the Indian Ocean; scientists wondered if some bioluminescent bacteria or Dinoflagellate-type flame-colored algae may be the cause of the phenomenon.

Alarming jellyfish

The luminescence of some marine life serves as an alarm or distress siren. A remarkable example of this is the Atolla jellyfish (Atolla wyvillei), an elegant inhabitant of deep waters. This jellyfish produces blue lights that are spread in circles in the water when it is attacked. Thanks to these lights, it tries to draw the attention of larger and stronger animals than the initial attacker in order to escape from harm’s way.

As can be observed in some species that we are familiar with, such as fireflies, the bioluminescence feature that is full of wisdom granted to some living beings is a thought-provoking biological miracle which does not only make us ponder where they got these abilities from but also reveals how so many intricate patterns are found in nature.

References

• Steven H.D. Haddock, Mark A. Moline and James F. Case. 2010. Bioluminescence in the Sea, Article in Annual Review of Marine Science, DOI:10.1146/annurev-marine-120308-081028 Source: PubMed.
• Edith A. Widder. 2001. Harbor Branch Oceanographic Institution, Fort Pierce, Florida, Marine Bioluminescence, Bioscience Explained, vol 1, no 1, pp. 1-9.
• Edith A. Widder. 2010. “Bioluminescence in the Ocean: Origins of Biological, Chemical, and Ecological Diversity,” Science, vol. 328, pp. 704-708.
• www.wired.com/2012/01/glow-little-spewing-shrimp-glow/ March 28, 2018.
• en.wikipedia.org/wiki/Malacosteus_niger / April 1, 2018.
• Harold, A. 2015. Malacosteus niger. The IUCN Red List of Threatened Species 2015: e.T190149A21909439. http://dx.doi.org/10.2305/IUCN.UK.2015-4.RLTS.T190149A21909439.en.
• https://www.iucnredlist.org/species/190149/21909439

Have you ever seen a rainbow? Until recently, I had looked at many rainbows, but had never truly seen a rainbow.

In his writings on faith and logic, religious scholar Bediuzzaman Said Nursi maintained that looking and seeing are two different things. In his book, The Words, he says: “The eye is a window through which the spirit looks at this world. If you use it on behalf of your carnal soul, without selling it to God Almighty, by gazing at transient, impermanent beauties and spectacles, it panders to lust and other carnal desires.”

Using Nursi’s reasoning, you might look at a magician who is right in front of you, for example, but never see how a trick is accomplished. The same thing happens when you look at a mathematical equation but don’t see what the x value is – unless you are good at mathematics.

After watching MIT physics professor Walter Lewin’s lecture “The Hidden Beauty of Rainbows,”[1] I am finally able to see the rainbow, instead of just looking at it. To share my fascination about this topic, and reinforce my own knowledge, here are some notes I took during Lewin’s lecture. Walter Lewin is the author of For the Love of Physics. This book is really a perfect book if you love Physics.

Figure 1.0

There are four fundamental facets we need to cover to understand a rainbow (Figure 1.0). The first is the “radius” of a rainbow. Since every rainbow has a radius, this means a rainbow is a circle. And every circle has a center point. A rainbow’s center point is below the horizon. Here, we can ask these follow-up questions:

1.1 How we can find the radius of a rainbow in degrees?

1.2 Do all rainbows have the same radius?

The second question is about the colors of a rainbow, specifically red. If you see a rainbow, there is always a red color. But:

2.1 Is the color red always on the inside or outside of the rainbow?

2.2 Does the position of the red color depend on the time of the day and year?

It’s obvious that light determines a rainbow. If there is a rainbow somewhere, there is an enormous difference in the brightness of the sky above and below a rainbow. We can now ask:

3.1 Where is it bright?

3.2 Where is it dark?

There are some additional questions we need to discuss regarding the second bow in Figure 2, specifically:

4 Have you ever noticed the second bow? If yes, then;

5 Where do you look for the second bow?

6.1 What is the color sequence of the second bow?

6.2 Is it the same as the primary bow, is it brighter, or is it reversed?

Figure 2.0

In order to understand rainbows better, we need to review some basic physics. Let’s start with reflection and refraction.

Mediums, reflection, and refraction

Definition: A medium[2] is the substance that carries a wave from one location to another.

When light goes from one medium to another, like from air to water, one of two things happens:

● Some of that light bounces back, which we call reflection. The light will reflect at the same angle at which it hit the surface.

● Part of the light doesn’t reflect, instead continuing into water at an angle. We call this refraction.

Each medium has an index of refraction, which tells us what the speed of light in that medium is. The index of refraction of air is 1.0003, and the index of refraction of a vacuum is 1.

That means the speed of light in air and in a vacuum is almost the same. That speed is 300,000 kilometers per second, and that’s why the index of refraction for air and a vacuum is 1. But in water, the index of refraction is approximately 1.33. The difference between 1 and 1.33 means that in water the speed of light is 33 percent slower than it is in air.

Snell’s law and an angle of incidence

There is also a connection between angle of reflection, angle of refraction, and the index of refraction. We call it Snell’s law.

Snell’s law illustrated:

Figure 3.0

To understand this formula, you need to know the definition of the sine of an angle.

Definition:The sine[3] is a trigonometric function of an angle. It is found by taking the length of the side opposite the angle and dividing by the length of the longest side of the triangle.

If α is 0°, then sin (α) = 0.

If α is 30°, then sin (α) = 0.5.

If α is 90°, then the sin (α) = 1.

Let’s do an example where we can apply Snell’s law (Figure 4.0).

Light comes from air to water at an angle of 60°. (This is possible, because the angle at which water comes in, the angle β, will be 40.6°.)

Definition: The angle of incidence[4] is the angle between the incoming light and the vertical on the surface.

Figure 4.0

Like professor Lewin said, “very simple, very straightforward.”

Figure 5.0 | Figure 5.0. Example of refraction and reflection. See also [5].[5]

Figure 6.0

Figure 6.0 displays a true wonder of water. Sunlight is coming from the left side, landing everywhere on half the surface of that raindrop. We can choose one very narrow beam of all that sunlight with a 60° angle of incidence. We call the angle of incidence “i” and the angle for the refraction “r.”

Of course, that narrow beam is the only a small fraction of the total.

At point A, two things happen (in accordance with Snell’s law);

● A little bit of light reflects.

● The remaining light refracts.

The light reaches point B inside the water drop. At point B, two things happen:

● Some of the light goes back into the air (signaling refraction).

● Some of the light gets reflected. (Therefore, at point B, the angles are the same, “r.”)

Then the reflected light goes on its way to point C. Here, a little bit of the light is reflected and goes back into the water. Most of it comes out of the water, which results in refraction.

At this point, if we use Snell’s law at point A, the reflection law at point B, and then Snell’s law at point C again, we will see that our angle for the refraction at point C will be, surprisingly, “i.”

Now, if we check the line that comes out from the water at point C, we will have a changing angle. We can call it φ (Phi). And for the angle φ, we have an algebraic formula, as follows:

φ= 4r — 2i

If you check the figure, you will see that we have 4 r and 2 i.

By the way, if we take the narrow beam which passes through the center of the raindrop, we can easily see that the angle of incidence is zero. In accordance to Snell’s law, this narrow beam goes straight through. Then it reflects back and finally it comes out of the water. This is true because:

if i = 0, then r = 0 and therefore φ = 0.

Let’s do something interesting and change the value of “i.” If the light hits the water drop higher up, the angle “i” increases. At some point, the angle φ also increases and reaches a maximum value.

Figure 7.0

If you recall, the index of refraction for water is 1.336. If we take any value of “i” on the table and apply Snell’s law, we can easily calculate values of r. And then, if we use the formula φ=4r — 2i, we can come up with the values of φ. This is illustrated in Figure 7.0.

If this doesn’t seem all that special, there is something else that you wouldn’t expect: φ reaches a maximum value, and when you go to higher values of i, then φ goes down again. This plays a key role in the formation of a rainbow.

The index of refraction depends on the color of the light.

Figure 8.0

As seen in the table, when the angle of incidence for red light is very close to 60°, the value of φ is at its maximum, which is 42.3°. In other words, the value of φ can be smaller than 42.3°, but it cannot be larger. For blue light, the angle of incidence is slightly lower, and the φ maximum is at 40.7°.

Water drop and a cone

A key question arises: Let us say we have one water drop, and the sunlight falling onto that water drop is coming from the left. What is that one water drop going to do with the white light from the sun that covers half of the rainbow?

Let us check first for red light and then for blue light.

Light beams will come out of this drop, and that cone will be filled with red light. But the angle for the light beams cannot be larger than 42°, meaning they can be smaller. Then we will see a cone of lights.

But why is it a cone? Because, if we go back to what was previously discussed, we will remember that one light beam comes in with an angle i, and then comes out with an angle i.

Figure 9.0

Figure 9.0 shows a representation of a water drop. The light that comes in at the angle of incidence is 60°. It refracts and reflects inside the droplet, then goes to point C and comes out of droplet at an angle of 42°. And, surprisingly, if the angle of incidence is 60°, when the light beam comes out, it has to be red light. On the other hand, there is not only one light beam coming in with an angle 60°. The entire surface of this water drop is illuminated by the sun, so there are an enormous number of beams for which the angle of incidence is 60°.

If we go back to Figure 9.0, we see the black line on this water drop. Any light beam that comes in anywhere on that black line will have an angle of incidence of 60°.

Figure 6.1

Now we will do the same for blue light. This time, we will have another cone which is completely filled with blue light, but when the blue light beams come out, the angle will be at a maximum of 40.7°.

Interesting fact: All the colors except for red and blue that are in the sunlight will be in between the red and blue.

Figure 6.2

A journey: refraction, reflection, and refraction

We know that when the light comes in, it goes through a journey. A light beam refracts, then reflects, and then refracts. That’s all. But, how about the light on the right side of the cone? Is there any light? When the sun shines in, does this water drop bring light there?

If the angle φ is larger than 42°, then, yes, it is possible. But we have already proven that the angle φ cannot be larger than 42°. So, it is impossible: There is no light outside the cone.

Another question… What will be the color of the light inside the blue cone? We should remember that the red light is everywhere in this cone, because as long as the angle φ is smaller than 42°, red light can be anywhere. The blue light is also almost everywhere because the blue light is allowed to be smaller than 40°. This means all the colors that we didn’t mention are coming out inside the blue cone and there will be just white light.

Figure 6.3

To summarize, if we have a water drop, and a bright light shining onto this water drop, we will see red, blue, green, white, and other colors inside the cone or circle. In other words, all the colors of a rainbow. And of course, there will be no light outside the cone. There are some experiments on YouTube that you can watch if you want.

Figure 6.4

You may think that at the location where blue comes out, if all the other colors can come out — which they can because the angle is smaller than 40° — the light should be also white, not blue. It is a nice approach, but wrong.

It is wrong, because of the light intensity. If you check the graph for the intensity of the light, you will see that different colors have peak points where φ reaches the maximum value. If all the colors are present and equal intensity, we see white light. That’s why the inside of the cone is white. However, when the color red spikes up, it dominates its location. We don’t even notice the other colors.

Figure 6.5

Looking at the sky

Let’s say you are standing at point A and the sunlight is coming from the left. Since the light comes from infinitely far away, all these lines are parallel to each other. Let’s say you look at the sky in direction B and pick a raindrop at any point. Any point you pick will cast the cone in the direction of the sun with the angle 60°.

When you look at the sky in the direction B, will you see light? You will not, because you are outside the 42°.

Figure 10.0

What if you look in a different direction? We will look at point C (it doesn’t matter where), and take a rain drop on line C. Light beams will do the same thing. Again, they will produce a 42° red cone. However, you will see white light. Yes, you read that right, white light, because you are looking straight in the middle of the cone of white light.

Let’s say we choose another angle and look at point D. If we choose a raindrop anywhere on line D, it will make no difference. It will cast into the sky the famous 42° angle because that’s the angle that was chosen there. If we look in that direction of the sky, what will we see? Yes, only red. No other color!

Figure 10.1

And now, we know where we will see red light, blue light, or white light. And we also know which direction has no light.

A rainbow is a bow in the sky

Let’s suppose the sun is on your left and you are standing at point A (Figure 11.0). Since there is light, you will have a shadow on the ground. As long as you look 42° away from any direction, you will only see red. That is because a cone is a spherical object. And that explains why the rainbow is a bowl in the sky. As long as it is 42° away from a line in any direction, you will always see red light. And if you decrease the angle, you will see the other colors in the sky.

And so now, we can make a picture of a rainbow.

When we look at the horizon, sometimes we see a rainbow. And we will have a center point somewhere below the horizon. The radius with 42° has red light. The blue light is closer to the 40° radius. This tells us that the red bowl is always on the outside and the blue light is always on the inside. That’s what we always see.

Figure 11.0

Double Reflection in the Rainbow

We can also include two reflections in the rainbow. If we do, we get refraction, reflection, another reflection, and then another refraction. So, the light beams reflect twice. And if we do this hocus-pocus again and again, we can come to a conclusion: There is no maximum value for the various colors, but there is a minimum value. In other words, various colors cannot be lower than a certain value, but they can be higher.

And if we do some calculation for the angles, we will see something very similar. We will find out that the second bow is pointing at the sky, and the angle is 10° above the first one (which is 52°). And, surprisingly, the colors of the second bowl reverse. In other words, red is the one on the inside, and blue is on the outside this time.

Figure 11.1

Interesting fact: There is no light between the two bowls. This is because of the φ maximum and minimum. We call that dark part Alexander’s dark band.[6]Additionally, since the second bowl is formed by φ minimum, sunlight can come out at angle φ or larger and there will be sunlight above a rainbow.

Figure 11.2

Some examples…

Image 1: René Descartes’ sketch of how primary and secondary rainbows are formed (probable engraver: Frans van Schooten the younger).

Image 2: This diagram was drawn by the famous physicist Newton who was one of the first to understand the rainbow, from his book Optics.

Image 3: Double rainbow. The primary red bow is on the outside, and blue is on the inside. Alexander’s dark band can be seen in between the two bows. It shows up really dark. For the secondary bow, red is on the inside, and blue is on the outside.

Image 4: Walter Lewis’ backyard and his rainbow. When you water your garden when the sun is high in the sky, you can get a rainbow all the way around you. 42° away from the line is always red. If you turn around and look back, it is red.

Image 5 | A white rainbow. It is very unique and rare. It is also called a fog bow, because fog has small water droplets that create this effect.

Image 8 | Red rainbow. Let us imagine that there is a rainbow at sunset. What would you expect to see? We would only see red light because there is only red light. What would happen to the white light inside the bow? It would be red too.

Some insight for leaves

Leaves are in charge of respiration in plants. They consist of the main mechanism producing food for plants, using sunlight via photosynthesis through which food for many more organisms, animals, and humans are provided. Having been assigned to convert solar energy to food, which they’ve been doing for millions, perhaps billions, of years, plants have been a significant instrument for sustaining life on or planet. It is as if plants turn their leaves upward in prayer to ask for food on behalf of all living things.

Morphology of a leaf

Leaves are composed of three sections: the base, blade, and petiole. The blade is the most important part of the leaf; it is wide and flat. The exact shape of leaves vary according to climate, geographical conditions, life span and risk of consumption by other organisms. In tropical climates, the blade is often very wide. In drier climates, it is usually smaller, in order to reduce water loss.

Leaves of some plants undergo a transformation called “metamorphosis” to fulfill different tasks. For example, some leaves have a thorny shape and protect the plant form herbivorous animals. Some leaves are designed to store water, and some are converted into a trap in order to capture insects to nourish the plant.

On the cross section of a leaf, one can observe that four layers constitute the inner part. The first one is the epidermis, which covers the leaf from top to bottom. This layer protects the leaf against external elements and is lined with a waterproof, waxy substance.

The palisade parenchyma is located on the upper side of the inner tissue and it houses chloroplast rich cells, which are lined up densely and carry out photosynthesis. The spongy layer under the palisade tissue forms the intercellular air spaces and this layer is responsible for the respiration of the plant.

For photosynthesis to occur, the leaf needs to receive the maximum amount of sunlight. The sun must hit the leaf at a perpendicular angle; thus, the leaf must be amply wide and must sit level. Because the sun hits different latitudes at different angles, plants have branches of different lengths facing different directions, and leaves have different curvatures. Furthermore, leaves are also lined up in a way so as not to block the sun’s rays. For this to happen, it is required for the leaf base to be thin and the leaves to be lined up in a spiral fashion that enables both lower and higher ones to harvest sunlight in the most efficient way. This type of arrangement exemplifies the golden ratio, which is observed among many structures in nature.

Each leaf sprouts at an angle of either 222.5 or 137.5, derived from division of 360 degrees, from the previous leaf under. This spiral leaf growth provides them with the most suitable place to harvest sunlight maximally. This way the gaps around branches are minimized and a maximum number of leaves is positioned without reducing the light capture capacity of the plant.

Seasons and leaves

Plants work like factories during spring and summer, producing a great deal of food through photosynthesis. Some of these foods help the plant grow and some are stored as starch for winter. With the onset of autumn, a majority of plants outside tropical zones go through hibernation, like many organisms do, and enter a dormant period. In order for plants, like trees and bushes, to survive the cold, their leaves are shed to minimize their surface area and conserve energy. Perennial green plants lose their aerial parts, too, including stems and leaves, and hibernate underground as roots, bulbs, and tubers. They sprout back from their roots once spring brings warmer weather.

Many leaves begin to fade and fall once autumn arrives. The leaves of some hardy plants – like cypress, pine, and spruce trees – continue to function through winter. In some of these trees, like the bay tree and the Indian sandalwood, there are protective layers covering the leaves against the cold. Other leaves, like pine needles, are created in a spiny shape to resist the cold.

Colors of autumn

Leaves seem green during the spring and summer months because the chlorophyll found in them absorbs all wavelengths other than green. The other major pigments found in leaves are carotene (orange) and xanthophylls (yellow). These two pigments are the most common pigments in nature.

As autumn approaches, and photosynthesis begins to end, chlorophyll starts to degrade and the other pigments begin to show. Thus, leaves turn yellow and bright red.

As the weather gets colder, the chloroplasts that are near the leaf’s bottom are broken apart, and sugar levels begin to elevate. The sugars produced during this season accumulate in the leaves day by day due to lower photosynthetic speed and reduced transportation to other parts of the plant. These sugars are converted into anthocyanins. At first, leaves appear yellow. A couple weeks before they fall, most leaves shift from yellow to red. Under abundant sunlight, due to concentrated anthocyanins, leaves seem brighter and more colorful – and thus red. Once the live tissues die completely, all leaves turn brown. This is due to the high concentration of tannin.

Leaf color varies not only because of plant genetics and external factors, but also because of climate. Temperature, humidity, soil composition, and levels of sun exposure all affect color. There is a higher degree of color change in the leaves of trees that grow in lower temperatures.

The composition of soil plays a major role in the color of leaves. Leaves that turn yellow early indicate a nitrogen shortage; on the other hand, the presence of a strong red color indicates very acidic soil. A high alkaline ratio is present in places where leaves are purple.

Walking among fallen leaves and the colorful scenery in a forest in autumn can trigger unique emotions. Depending on the psychological state of a person, the colors of autumn sometimes remind us about the briefness of this world, but they can also hint at the infinite life to come.

The motifs and patterns of leaves

Receiving sufficient sunlight is a significant matter for leaves. Therefore, they are created differently. No two plant leaves are the same.

Some of the leaves are simple and some are compounds. According to their arrangements, opposite, alternate, whorled, and rowed forms exist. Leaf blades can be ovals, kidneys, triangles, or even hearts. Edges can be smooth, serrated, toothed, or lobed. Leaf veins can also have many different motifs.

Each plant species has its own leaf motif. The alfalfa leaf has a triple pattern of specific angles; walnut leaves have an opposite arrangement of eight to ten. A hand-like motif, like the fingers of a praying hand, formed of seven leaves, can be observed on chestnut trees.

It was too early for Melanie to congratulate herself because the aliens would always be after her. They would always be looking over her shoulder, keeping track of what she did, trying to read her mind…

Melanie rolled around in bed and looked at her digital clock. It read: 7:39

She groaned to herself. That must mean it was time…

She got out of bed and looked around her room. Everything seemed normal. The sun appeared to be bright as it flooded through her window with the red curtains. Her clinical psychology text books on her desk were exactly where she remembered putting them. Her bed was in the correct position along the wall.

She deliberately avoided looking at the mirror.

She was safe for now; the aliens hadn’t come for her yet. But she knew her neighbor was a Russian spy so it was only a matter of time before he told the aliens about the key she had found…

…the key she had safely hidden under her bed in a Cheerios cereal box. No one could find it there.

Melanie carefully examined the floor she would walk on. She was certain it was safe to walk, but those aliens really knew how to set booby traps. She really had to be prudent-or else!

She carefully placed her foot on the carpet. The carpet had a collage of various, colored squares on it. Aliens always had a hard time getting into her room, but they had implanted sensors under the floor that sent them a signal every time she stepped on the red squares. They did this so they could tell how often Melanie was in her room.

But Melanie had figured out a way how to fight them. If she just avoided those red squares, they would never know.

Stepping on her toes, she tiptoed around the red squares and reached the other side of the room. She carefully checked the books on the desk, the position of her bed, the window and the curtains-avoided the mirror-and then came out of the room.

She quietly pulled her door shut and peeked over her shoulder down the hall.

Oh no! There were too many mirrors!

The mirrors stretched along the wall on either side, disrupted only by the occasional bedroom door. But there were only supposed to be one of them between the master bedroom door and the bathroom.

Hmmm; could this be the aliens?

In any case, she had to avoid the mirrors – the aliens must NOT find out about the key!

She got onto her hands and knees. If she could just slide under the line of the mirrors, she would be safe. Thus she scrambled to the other side, carefully avoiding the red squares on the carpet, and finally got up on her feet at the end of the hall.

It was too early for Melanie to congratulate herself because the aliens would always be after her. They would always be looking over her shoulder, keeping track of what she did, trying to read her mind… Oh no, she hadn’t thought about that! How should she protect her mind?

She would stick it out as long as she could. There was no way she would allow those aliens to get the key! Not while she was still alive.

She had to eat though, or else how could she have the strength to protect the key?

Melanie opened the cereal cupboard and confronted a bunch of boxes. There were Cheerios, Honeycombs, Pops, Fruit Loops, Apple Jacks and many more.

Pleased with the variety, she reached for the Cheerios.

Oh no!

She remembered something.

Last night, she had seen only Honeycombs in the cupboard. Yes, she’d Melanie had gone out with her mother, and they’d only bought Honeycombs. Where did all the others come from?

How could she not have understood? It was the aliens. They must know she had hidden the key in a cereal box. But they didn’t know which one, did they? So they put a bunch of cereal boxes here to see which one she would pick.

But Melanie would not lose!

“Oooooo!” she cooed loudly. “We have Honeycombs! Yum! I love Honeycombs!”

And that’s what she got out of the cupboard and put on the kitchen island. She had to distract the aliens.

She got out her bowl-not the red one; you could never be too careful-and a spoon. These she laid down beside the cereal box. When she had retrieved the milk from the fridge however, things had changed.

There were five sets of bowls and spoons on the island!

She calmed herself down.

This had happened before. It was the aliens’ way of saying they knew she was lying to them.

But she could always get around it.

She touched the first bowl and her finger slipped right through it. Nope, not this one.

Her fingers slipped through the second one but jammed into the third. Hah! That one was the right one.

She poured her cereal and milk into it. Suspiciously, the remaining two bowls somehow filled themselves.

But everything was alright. It didn’t matter how hard those aliens would try to intimidate her, she would be strong.

However, she was very sad. She didn’t realize at the time, but before she found the key – before the aliens and the Russian neighbor – everything had been so easy, so safe.

It was hard to appreciate a good thing when its loss was unimaginable. She had never believed in aliens and now they were in her life, changing things, manipulating her. They were always there.

Her breakfast finished, she finally pulled herself together. It would be alright. Everything would be alright. She was sure of it now.

As she re-entered the hallway, she saw that the mirrors were gone. There was only one, exactly between the master bedroom and the bathroom.

Before entering the bathroom, Melanie paused and looked at herself in the mirror. There was a snake coiled around her temple.

She instinctively reached up but couldn’t feel it.

“You’re not real,” She said to it. “No, none of it is real… the key? The aliens?”

The snake in the mirror bobbed its head in a nod.

It was a wonder why anyone would believe only what they could see when Melanie had to doubt everything in her life.

Something caught her attention and the recognition of her illness faded instantly from her mind. There was red smoke coming from her bedroom.

Oh no, the aliens must know! They must have understood about the Cheerios cereal box!

Humps store fat and also protect camels’ other tissues from heating due to sun light. It has also been reported that camels’ coats insulate them from heat by reflecting sunlight. This extra fat tissue (about 10-15 kg) provides not only energy in long desert journeys but also water through a biochemical process which leads to the production water molecules (1,111 g of water per 1,000 g of fat converted). It is also noteworthy that sparing a specific part of the body for storing fat and refraining from storage in other tissues provides decreased fat density, thus lessening heat retention due to fat.

Water is scarce in the desert and needs to be stored in large amounts when available. Amazingly, camels can drink up to 150-200 liters of water at once, and yet, after three days, there is no sign of water in their stomachs. Drinking so much water in such a short time could be a problem; this would be like a human drinking 20-40 liters of water in 10 minutes, which would induce water intoxication. The oval shape of camel’s red blood cells, and their ability to swell until double in volume provides plasticity in this situation.

Camels can lose up to 25% of their bodily fluids without showing signs of dehydration. This provides an extra durability against long-term water shortage. For comparison, most mammals can only withstand about 3-4% dehydration; further water loss might lead to cardiac failure due to thickened blood. Another protective property given to camels that allows decreased water loss is that they drop feces that are so dry they can be used as a fuel. For comparison, a dromedary camel loses 2.5 liters of water daily through feces (about just 40-60% water) while cattle lose 20-40 liters.

Camels also regulate sweating in a unique way. Their body temperature does not need to be constant; it can move between 34 and 41 degrees centigrade. They don’t sweat until it is over 40 degrees. These regulations allow them to preserve approximately 5 liters of water per day. A camel’s kidney function is also tightly regulated according to the availability of water. If they don’t drink water for days, urine production is limited to approximately 500g. On the other hand, if water is abundant it could go up to 7 liters. This urine is unusually thick, too – it resembles syrup. Remarkably, camels never run, which would increase transpiration; instead they just amble quickly.

However, dehydration can be still an issue, which will negatively affect the flow of red blood cells. Remarkably, camels have oval red blood cells, which better resist clumping when compared to round, human red blood cells. There are no other mammals with oval red blood cells.

Food is another problem for animals living in the desert, especially for big ones like camels. Interestingly, camels have split lips, which allow them to graze easily. They can eat thorny twigs without any injury. Eating green plants also provide the moisture that they need.

Sand is often a problem, especially during sand storms. Remarkably, camels are equipped with systems that allow them to close theirs nostrils to get protection against wind and sand. In addition, camels have two layers of thick eyelashes, which provide additional protection from the dust. The specific shape of their nostrils allows them to preserve vapor and allows returning it to the body.

Traveling over sand is difficult. Camels are created in a way that allows their four legs to kick in all directions. Remarkably, Camels are equipped with paddy hoofs and two toes to protect them from sinking in the sand and burning of the hot sand. In addition, they have long legs, which keep them further from the hot ground.

Though the modern world seems to have replaced them as a major mode of transportation, they are still widely used in areas such as North Africa.

It seems likely many more remarkable discoveries about camels are on the horizon. Medical researchers are studying how camels function – because these amazing animals might contain a secret which could save human lives.

Link between excess body fat and cancer

It is obvious that camels undergo a rapid cycle of fat storage and destruction. They store large amounts of fat – up to 15 kg. The correlation between excess body fat and various cancers in humans has long been known. For instance, a WCRF report recommended maintaining a BMI of 20-25%, and claimed it as one of the key factors can prevent cancer. However, a connection between obesity and cancer at the molecular level remains largely unknown. Intriguingly, a recent study performed at UT Southwestern Medical Center by Dr. Scherer and his colleagues shows how fat cells induce cancer cells to thrive in the breast, or fatty livers.

They showed that fat cells allow the growth of tumors via the secretion of a variety of extracellular factors. One of the fat cells derived extracellular factor, which is found abundantly in unhealthy fat tissue, is endotrophin. What endotrophin does is cause induction of blood vessels, which feeds tumors; as we gain weight, this increases the chance of getting cancer. The inhibition of endotrophin by antibodies in mice with breast cancer had a remarkable reduction on tumor growth and prevented metastasis to other tissues.

Well, if fat is bad and could increase the chance of cancer, and camels store and destroy fat as a survival mechanism, then how do camels manage the increased risk of cancer? Do they also have another remarkable property that lies on the horizon to be discovered? It’s probable there is a mechanism in camels that protects them from such adverse effects of excess fat. If so, how can we benefit from it to solve one of the biggest hurdles to human health? Some researchers might be close to answering these questions.

Antineoplastons

An interesting study, started back in 1967 by Dr. Burzynski and colleagues, examined the peptides in the urine samples of healthy and cancerous patients. They have found that cancer patients lacked a significant content of peptides in their urine. This finding led to the hypothesis that there might be a protective mechanism against the formation of cancer in the body through peptides. They identified a specific group of peptides found in the urine, later named Antineoplastons that show anti-cancer properties. A treatment scheme was developed through balancing the antineoplaston deficiency in cancer patients to control the abnormal cellular growth. They have tested both in laboratory and on the various cancer patients, and demonstrated some degree of response, albeit with excessive criticism from the scientific community. The mechanism of action of antineoplaston is proposed as functioning as a molecular switch; this activates tumor suppressors and inactivates oncogenes (drivers of cancer formation). Dr. Burzynski, in his clinic at Houston, TX, is still providing treatments to cancer patients with late stages of cancer using Antineoplastons, and claiming that there are survivals with his approach.

The use of compounds identified in the urine could be considered as a kind of urine therapy, which is used as an alternative treatment to cancer that has been historically practiced for different purposes. This reminds me of the prescription of some Bedouins, who got sick when they came to city. They suggested drinking the milk and urine of freely grazing camels at the city’s outskirts. It has been said that they drank this concoction and grew healthy again. This incidence and historical use of urine therapy suggests that camel’s milk and urine could have unique substances that might be effective in the treatment of diseases, maybe even of cancer. An interesting point here is that the Prophet Muhammad, peace be upon him, specifically ordered to drink from animals that are freely gazing, which is also mentioned in the Qur’an, such as in the miracle of the Prophet Salih with the she-camel about which his community was tried: “[S]o leave her to feed in God’s earth” (11:64). This points to not only the consumption of products from freely grazing animals, which is known to affect their nutrition levels and taste, but also to their increased therapeutic potential.

The Holy Qur’an calls for reflection on the camel specifically. I am little bit disappointed that the Houston Zoo does not have such a monumental animal. Contemplation on the camel provides various lessons on the understanding the Maker and Owner of the worlds and living beings, and the superior techniques used in the makeup of animals that live in the harsh conditions of deserts.

References

• 10 Amazing Facts About Camels. Retrieved from http://news.softpedia.com/news/10-Amazing-Facts-About-Camels-68843.shtml on April, 14, 2013.

• 20 Amazing Facts About Camels. Retrieved from http://www.environmentalgraffiti.com/news-expressive-faces-camels?image=1#mzJyLiKcQPMoM1tD.99 on April, 14, 2013.

• Facts About Camels. Retrieved from http://lifestyle.iloveindia.com/lounge/facts-about-camels-1654.html on April, 14, 2013.

• Camel. Retrieved from http://en.wikipedia.org/wiki/Camel on April, 14, 2013.

• Excess Body Fat Causes Cancer. • The WCRF report, 2007. Retrieved from http://www.medicalnewstoday.com/releases/87350.php on April, 21, 2013.

• Finding – and fighting – the fat that fuels cancer. Retrieved from http://www.utsouthwestern.edu/newsroom/news-releases/year-2013/feb/endotrophin-scherer.html on April, 21, 2013.

• Jiyoung Park and Philipp E. Scherer. Adipocyte-derived endotrophin promotes malignant tumor progression. J Clin Invest. 2012;122(11):4243–4256. doi:10.1172/JCI63930.

• Stanislaw R. Burzynski. The present state of antineoplaston research. Integr Cancer Ther. 2004 Mar;3(1):47-58.

• Urine Therapy. Retrieved from http://en.wikipedia.org/wiki/Urine_therapy on April 22, 2013.

• Ravi: Enes. Tirmizi, Tibb 6, (2043)

“The human brain, then, is the most complicated organization of matter that we know.”
Isaac Asimov

If someone asks what you recall when you look at the following pictures, I can hear you say ‘President Obama’ and ‘Statue of Liberty’. You just see a fragment of the pictures and remember them.

So, how does it happen? This is just a simple task for the brain. It stores an image and retrieves it whenever a part of it is seen. Amazing features of the brain, especially its power to learn and make decisions, inspires computer scientists in the field of artificial intelligence.

In computer science, an artificial neuron is a simple computational model of a neuron in the brain that excludes biological properties. Artificial neural networks (ANNs) are composed of artificial neurons, and they are utilized to solve specific problems, especially those that require learning and decision-making. ANNs may not be the best solutions in various machine learning problems; however, they are accepted as strong alternatives. Although ANNs don’t claim to be so, currently they are not even close to producing a simple model of the brain. Let’s take a short journey into the world of ANNs to experience the extreme difficulty of modeling the brain.

Some Applications of ANNs

Figure 1: Overview of ALVINN structure. Images obtained from the camera installed on the vehicle are provided to the ANN, and ANN decides the steering angle.

(adapted from: http://virtuallab.kar.fei.stuba.sk/robowiki/images/e/e8/Lecture_ALVINN.pdf).

ANNs have various applications in very large spectrum of problems that require learning, such as the Autonomous Land Vehicle in a Neural Network (ALVINN). The structure of ALVINN is shown in Figure 1. The ALVINN project by Carnegie Mellon University started in 1986 and aims to make a vehicle without a driver (Mitchell, 1997). In this project, ANN learns the steering habits of a driver. A camera is mounted on the vehicle to capture the images of the road. With respect to the continuous images provided, ALVINN determines the steering level with 45 different angle positions from sharp left to sharp right. Steering is updated 15 times per second so that it allows real-time control while driving at 55 mph. The system is trained by the data obtained from a human driver in a simulator and a real vehicle. ALVINN was able to speed up to 70 mph and successfully drive at 55 mph for 90 miles.

Figure 2: Handwritten zip codes (LeCun, et al., 1989)

Another example is handwritten zip code recognition (LeCun, et al., 1989). Zip codes from US Mail written by various people with large variety of styles and sizes were used in the experiments. Figure 2 presents some examples of zip codes in the experiment database. After the ANN was trained with more than 7,000 digits in the zip codes, it was 99% successful in recognizing around 2,000 digits in new zip codes.

Learning and Decision-making in ANNs

In order to understand the challenges better, we will first examine learning and decision-making in neurons and ANNs on simple examples.

Figure 3: (a) A typical neuron (adopted from http://commons.wikimedia.org/wiki/File:Neuron_-_annotated.svg), (b) artificial neuron in computer

Figure 3(a) illustrates a typical neuron which is the constituent of brain’s complicated network structure. Each neuron receives information as signals via dendrites, then evaluates it and generates a signal that is transmitted through its axon. A neuron has many connections between its dendrites and the axons of various other neurons. Figure (b) demonstrates an artificial neuron in computer science. It is considered a function: dendrites as the inputs of the function and generated signal via the axon as the output of the function.

Let’s see an example of an artificial neuron that understands if a given produce is a red apple or not. Think about how you understand whether a produce is a red apple or not. You see the shape and the color. However, it might be an artificial one for decoration. Then you can taste it and you get the sweetness of the apple. Similarly, our neuron receives three pieces of information as the input; ‘has circular shape?’, ‘is sweet?’, and ‘has red color?’. If the output is ‘yes’, that means the neuron recognizes the produce as a red apple. Otherwise, it will be ‘no’, which means the produce is not a red apple (Figure 4). Here, the neuron’s function is defined in such a way that it only generates ‘yes’ when all the inputs are ‘yes’.

Figure 4: Example inputs and outputs for the artificial neuron.

In an artificial neuron, some of the information can be more important than the others. For instance, to have red color may be more valuable in determining the price of produce. Assume that round shape and sweetness has equal value of $1; however, having red color is $2 – twice as valuable as the other features (Figure 5).

Figure 5: Artificial neuron with different input weights. Arrow thickness indicates the importance.

So, what is the big fuss about artificial neurons if they are only functions? In fact, the main feature of artificial neurons is learning. Considering the last example above, the neuron initially does not know the importance of the dendrites, i.e. the weights of inputs are all the same. If not trained, the neuron will generate the following answers which are sometimes wrong as indicated in Table 1.

Table 1: Artificial neuron before training; highlighted answers are wrong.

In real life, a teacher trains students. For instance, the teacher asks a question and if the received answer is not correct, she provides the right answer. Students learn the right answer and use this correct information in their lives. It is similar in artificial neurons as depicted in Figure 6. When the response of the neuron is incorrect, it adjusts the importance of the dendrites with respect to the correct answer hence it answers the same question correctly next time. During the training session, the neurons will be continuously asked the values of all the produce until it learns them all.

Figure 6: The learning process of the artificial neuron.

What if the problem gets complicated? Then one artificial neuron will not be sufficient, and we will need a network of neurons; ANNs. A more complex problem, ‘learning the digits’ is indicated in Figure 7.

Figure 7: (a) Digit learning problem, (b) ANN structure that learns digits. Due to the difficulty, only the connections between the input layer and first / last neurons in the middle layer are shown.

ANN has 3 x 5 = 15 input units like receptors of an eye retina. Each input unit corresponds to one square in the digits; either filled or blank. Each input unit is connected to the dendrites of all neurons in the middle layer. The output of each cell in the middle is connected to the dendrites of all neurons in the output layer. There are 10 output neurons corresponding to the digits from 0 to 9. After the ANN is trained, it provides a correct answer to the given digit as input. When digit ‘3’ is provided to the network, the neuron labeled with number ‘3’ in Figure 7(b) is triggered and outputs ‘yes’ whereas the rest of the neurons output ‘no’.

Figure 8: Faulty digit ‘3’ with a missing black square on the top right side.

Initially, all neurons in the network have equally weighted dendrites. After a reasonable amount of training, neurons adjust their weights, and ANN is able to identify digits. Here, we have some major challenges: what does ‘reasonable amount of training’ mean? When the ANN is undertrained, it will not always answer correctly to the digits given in Figure (a). In the other case, when the ANN is overtrained, it will memorize the digits provided during the training and will not recognize the faulty ones such as the one in Figure 8.

Challenges of ANNs

Beyond the mentioned the overtraining / undertraining problems, ANNs have a bigger challenge – how to determine the structure of ANN that fits the problem? In the digit learning example, we’re lucky because the structure is provided in Figure 7(b). However, the outcome of the solution may drastically depend on the number of neurons and the connections among them which is indeed a hard problem for ANNs.

The huge capability of the brain in learning and decision making comes from the huge number of neurons – around 100 billion – and the enormous amount of connections among them – from 100 to 500 trillion. The challenge to design such a huge network requires huge computation power. With the increasing number of neurons, ANN dramatically slows down especially during the learning process. Here, our example is a simple learning task of 3×5 pixel digits compared to the brain’s acquisition capacity of hundreds of images in our daily life. 

When the number of neurons gets larger, the reliability of network also reduces. Small adjustments in weights may change the entire behavior of the network hence it is easy to lose control of ANN. In contrast, the brain has a robust system, and its fault tolerance is admirable. Although neurons die every day, this doesn’t affect its performance significantly. The training method and how to update the weights are other hard problems leading to many different approaches in the neural computation field.

We have presented some simple tasks that can be solved using a few neurons and their challenges. On the other hand, consider the thousands of problems, various and incredible amount of information we have learned, and the thousands of decisions we make. The brain is truly amazing from the computer science perspective.

Bibliography

• Hertz, J. A., Krogh, A. S., & Palmer, R. G. (1991). Introduction To The Theory Of Neural Computation. Reading, MA: Addison-Wesley.
• Hopfield, J. J. (1982). Neural networks and physical systems with emergent collective computational properties. Proceedings of the National Academy of Sciences of the USA , 79, 2554-2588.
• LeCun, Y., Boser, B., Denker, J. S., Henderson, D., Howard, R. E., Hubbard, W., et al. (1989). Backpropagation applied to handwritten zip code recognition. 1 (4), 541-551.
• Mitchell, T. M. (1997). Machine Learning. McGraw-Hill.

Until today, almost all of your organs and systems introduced themselves and explained the great artistry in their creation along with their wisdom and precision. Certainly, these were not just for your information. Of course, it is important for you to know about your organs and their duties, and for you to live accordingly with this knowledge. However, its main purpose has been to introduce you to your Lord, who created you and all living and nonliving things perfectly. Just like seeing a work of art and not appreciating the artist is a twisted view, so is seeing the art exhibited on the body of the world’s most dignified entity, the human being, and not appreciating our Lord. It would just be a worthless and pointless heap of knowledge.

Today, we will look at the human body statistically, have our last lesson, and say goodbye.

Before we talk about the systems and organs that make up your body, you should know that it is a blessing that God didn’t leave you in nonexistence, and put you into existence. Then, you should know that it is also a blessing that He didn’t leave you as inorganic molecules, but created you as a living organism. For you to understand better, I would like you to look carefully at the delicate measures of the numbers I will give you in the tables below and to realize how high your value has been lifted.

The weights and percentages of inorganic elements in a 70 kg human body:

Oxygen…….. 44 kg……. 63%
Carbon……. 14 kg……. 20%
Hydrogen……. 7 kg……. 10%
Nitrogen……. 2.1 kg……. 3%
Calcium……. 1 kg……. 1.5%
Phosphorus……. 700 g……. 1%
Potassium……. 170 g……. 0.25%
Sulfur….. 140 g……. 0,2%
Chlorine……. 70 g……. 0.1%
Sodium….. 70 g……. 0.1%
Magnesium.. 30 g……. 0.04%
Iron…… 3 g……. 0.004%
Copper…… 300 mg……. 0.0005%
Manganese….. 100 mg……. 0.0002%
Iodine……. 30 mg……. 0.00004%

The total percentage of trace elements found in the blood serum and in enzymes, such as zinc, cobalt, cadmium, molybdenum, nickel, lead, fluorine, selenium, mercury, and aluminum, is 0.80526%.

As you can see, 76% of you (53.1 kg of oxygen, hydrogen, and nitrogen) are gases that dissolve into the air. These aren’t worth anything because there are plenty of them in the air. From 14 cents per kilogram, 14 kilograms of carbon (coal) is worth around 2 dollars. One kilogram calcium (lime) is worth around 12 cents. 140 grams of chlorine and sodium together (salt) is worth around 3 cents. All of the other elements (such as iron, copper, and magnesium) are worth a handful of soil, because they are found easily in soil, and there is only very little of them in the human body. So in total, your elements are worth $2.15.

Let’s increase your value a little bit! Our Lord didn’t leave you as elements; He turned you into organic material with very large molecules, such as protein, fat, carbohydrates, and vitamins. That gives us the table below:
Organ…. Water (%) …. Fat (%)…… Protein (%)…. Ash (%)
Skin…… 64.68…… 13.00…… 22.10…… 0.68
Skeleton…… 31.81…… 17.18…… 18.93…… 28.91
Teeth…… 5.00…… 0.00…… 23.00…… 70.90
Skeletal muscle…… 79.52…… 3.35…… 16.50…… 0.93
Brain-Spinal cord…… 73.33…… 12.68…… 12.06…… 1.37
Liver…… 71.46…… 10.35…… 16.19…… 0.88
Heart…… 73.69…… 9.26…… 15.88…… 0.80
Lungs…… 83.74…… 1.54…… 13.38…… 0.95
Spleen…… 78.69…… 1.19…… 17.81…… 1.13
Kidneys…… 79.47…… 4.01…… 14.69…… 0.96
Pancreas…… 73.08…… 13.08…… 12.69…… 0.93
Intestines…… 79.07…… 6.24…… 13.19…… 0.86
Adipose tissue…… 50.09….. 42.44…… 7.06…… 0.51
Other tissues…… 70.40…… 12.39…… 16.06…… 1.01
Blood and lymph…… 93.33…… 0.17…… 5.68…… 0.94
Total…… 67.85…… 12.51…… 14.39…… 4.84

If you wonder about your value as water, protein, fat, and ash, you can calculate it according to a 70 kg person. If you do this, you can see that you are made up of 47.495 kilograms of water, 8.757 kg fat, 10.073 kg protein and 3.388 kg ash (mineral salts). Since the water in you is dirty and not clear, it isn’t worth anything. Your minerals and ash aren’t worth anything because there are plenty of them in soil. For $1.42 per kilogram, your fat is worth around $12.86. Your protein is worth around 16 kilograms of lamb, which costs around $36.57. So when you are elevated from elemental material to organic material, your value rises up to around $50.

Of course, our Lord didn’t leave you like this. He created you in the form of organs and tissues, which carry out miraculous tasks so that you can stay alive. Now, let’s see the groups of trillions of differentiated cells:

Total number of cells in the human body………… around 100 trillion
Number of cells that die in one second…………around 50 million
Number of cells created in one second…………around 50 million
Number of cell types…………more than 200
Number of red blood cells in 5 liters of blood…………25 trillion
Height reached by putting all of our red blood cells on top of each other…………around 60.000 km
Length reached by putting all of our red blood cells side by side…………192.500 km
Red blood cells’ surface area………..more than 1000 m2
Number of white blood cells (leucocytes) in our blood…………40 billion
Number of nerve cells…………30 billion
Length of a sperm…………35 micrometers
Diameter of an egg cell…………100-120 micrometers
Average length of a liver cell…………30-50 micrometers
Lifespan of small intestine mucous cells…………1.4 days
Lifespan of stomach entrance area (cardia) mucous cells…………9.1 days
Lifespan of stomach exit area (pylorus) mucous cells…………1.8 days
Lifespan of epithelial cells in lung alveoli…………8.1 days
Lifespan of large intestine (colon) mucous cells…………10 days
Lifespan of upper skin (epidermis) cells…………19.2 days
Lifespan of covering epithelial cells in the bladder…………66.5 days
Lifespan of neutrophile leucocytes…………45 days
Lifespan of eosinophile leucocytes…………10 days
Lifespan of lymphocytes…………5 days to 1 year
Lifespan of monocytes…………months
Lifespan of red blood cells…………120 days
Number of times a red blood cell travels the body during its life…………300.000
Number of red blood cells generated in a second…………2.4 million
Number of red blood cells generated in a day…………208 billion
Lifespan of a liver cell…………222 days
Lifespan of a kidney cell…………286 days
Number of mitochondria (power plant) in a nerve cell…………up to 10.000
Number of ribosomes created in a liver cell in one second…………180
Total length of the DNA in one cell…………2 m
Number of muscles in the body…………around 600
Number of muscles that work when smiling…………15
Number of muscles that work when frowning…………43
Total amount of work done by our muscles in one day
(Equal to lifting a 6 ton truck 50 meters into the air with a crane)…………around 3.106 Newtons
Total number of capillaries…………30 billion
Number of alveoli in the lungs…………400 million
Total amount of air taken in by the lungs in one day……………around 10.000 liters
Total amount of air we use in 75 years…………around 285 million liters
Total length of the nephrons in the kidney…………around 50 km
Total length of the glomerulus capillaries in the kidney…………around 25 km
Total inner surface area of the kidney channels…………20 m2
Total filtration area of the Bowman capsules in the kidney…………1 m2
Total skin weight…………11.15 kg
Total surface area of the skin…………1.5-1.8 m2
Total length of capillaries in 1 cm2 of skin…………around 1 m
Weight of dead keratin cells that fall off the skin in one day…………10 gr
Length of the nerve fibers in the skin…………80 km
Number of sweat glands…………around 2 million
Number of sebaceous glands in the skin on the head…………around 120.000
Total number of cells in the skin…………around 100 billion
Number of sensory receptors in the skin…………around 60 million
Daily sweat amount…………800 ml
Maximum daily sweat amount…………18 liters
Number of cells in the retina…………127 million
Number of values of the same color our eye can distinguish…………around 200
Number of shades of light that we can perceive…………around 500

The reason I gave all these numbers was not just to show the multitude of cells, organs, and tissues, but to emphasize that our Lord can create these with the precision that He creates a single cell. Mammals also have the organs and tissues that I have mentioned. Besides, some mammals have different organs with superior aspects. From this point of view, we are not much different from a cow or a horse. However, our Lord says that He created us in the best form possible, equipped us with superior qualities, and granted us the authority over all creation. Dear Peter! It’s time that you shed out of being an animal and rise to the degree of humanity. You cannot do this with your cells, organs, or tissues, but by gaining knowledge of divinity via spiritual virtues (such as the mind, conscience, and free will) that our Lord gave you.

If we see our body as a palace, could the stones, glass, porcelain, and wood come together and say, “Come on let’s make a palace, which will be the greatest palace in the world.” Could elements first turn into organic matter with macromolecules, then into cell organelles, then into cells, and finally into cells with different special duties, all on their own?

Finally, I believe it will be useful to give a table that shows every organ’s share in your body. My advice is not to evaluate anything materially. You cannot live without your pancreas, which only takes up a very small part of your body. Your heart, which is only 0.7% of your body, pumps the water of life (blood) to all of your organs; and your brain, which is 3.5%, manages your whole body. You can never give up on your kidneys, which take up only 0.5%.

Percentages of organ weights to the total body weight
Skeletal muscle (red meat)…………31.56 %
Skeleton and teeth…………14.90 %
Adipose tissue…………13.63 %
Skin…………7.81 %
Blood and lymph…………3.77 %
Lungs…………4.15 %
Brain and spinal cord…………3.52 %
Liver…………3.41 %
Intestines and stomach…………2.07 %
Kidneys…………0.51 %
Heart…………0.69 %
Spleen…………0.19 %
Pancreas…………0.16 %
Cartilage, ligaments, blood vessels and peripheral nerves…………13.63 %

All in all, we can say that the human body has holistic perfection with its functional parts, from hair to nail, to intestines and kidneys, as well as its aesthetic beauty.

Dear Peter! We have talked with you for a long time. I hope it was useful. I did everything I could. I am sorry that I couldn’t portray your true value!

White blood cells (leukocytes) are fewer in number and their duty is to fight against germs. How this process works is to be expounded by the immune system under a separate title. The red blood cells are my main building blocks and they are born by the dividing of the main cells in the bone marrow. After passing through a few phases, they lose their nucleus and are filled instead with hemoglobin, a magnificent substance containing iron. Hemoglobin’s most vital function is its binding oxygen and then carbon dioxide after releasing it. Hemoglobin reaches everywhere, traveling with the blood stream. When it comes to the lungs, hemoglobin dumps the carbon dioxide and replaces is with oxygen. Then it supplies this oxygen to the cells and removes the carbon dioxide, which is produced by burning organic compounds. So its short life passes with the same ceaseless cycle to continue your life. Hemoglobin molecules’ longevity is approximately 120 days. They contain no cell elements like ribosome, mitochondria, and nucleus and therefore cannot repair themselves. They simply die when they get old. Sad? Not at all! Red blood cells fulfill the duty they were created for and leave the stage for new ones. They are broken down in the liver and bone marrow and the iron they contain is absorbed. A certain part is transformed into bilirubin, giving bile its yellow color. As you see, nothing is truly wasted.

The red blood cells in circulation number around 25 trillion, and this number does not vary greatly, as the dying ones are constantly replaced. Their measuring gives doctors an idea about possible diseases. The amount depends on various factors’ reciprocal balance. A hormone (erythropoietin) secreted by the kidneys increases the rate of production of red blood cells, in response to falling levels of oxygen in the tissues. If you lose blood due to an accident or medical operation, the stem cells in the bone marrow receive an emergency alert to produce more red blood cells. On the other hand, if you get a blood transfer, stem cells are ordered to stop producing, due to the excess of red blood cells. You see, even such basic knowledge about bodily systems fills the learner with wonder.

Deficiency of red blood cells, scientifically known as anemia, should not be ignored. It results in pallor and weariness; you feel like sleeping more. In order to avoid this condition, your body needs different things such as group B vitamins (B6, B11, B12), vitamin C, amino acids, and iron. Since it is hard to pinpoint the deficient substance, doctors generally prescribe iron-rich multivitamin supplements.

Red blood cells divide into four types, which determine the blood groups A, B, 0, and AB. In addition to the blood group, another feature known as Rh (rhesus) factor is important to know particularly before a blood transfer. Transferring the wrong type of blood may result in death.

Platelets, which are scale-shaped cells and circulate with me are not independent; they are pieces which came off bigger cells. In a cubic millimeter of blood, 250 to 350 thousand of these little scales are found and their duty is of vital importance. If it weren’t for these pieces, the slightest cut could cause death because your bleeding would not stop. Clotting is a great blessing. It usually blocks the surface of a wound within five minutes, stopping the flow of blood and saving your life. Clotting is realized through particular molecules in these minute scales as a result of a complex chain of reactions using enzymes, vitamins, and salts. Every step of this chain of reactions is another stitch to fix the wound. Other blood cells pile up and stick together behind this net and they dry up. If such clotting occurred inside the blood vessels, it would make a disastrous effect by blocking the bloodstream. I also have enzymes to break down little amounts of such clotting. As you see, everything is splendidly organized.

Peter! A blood test reveals very critical medical data. As I visit every organ, I exchange certain substances with them. Therefore, detection of an unusual substance in me can be an early warning for a disease. Nowadays, it even helps an early diagnosis of cancer.

It is not so easy for me to explain the wisdom behind all of my duties and capabilities. But to give you an idea, there are specialized departments for studying just me at medical faculties and research institutions throughout the world.

All the organs functioning in your body have a direct or indirect relationship with me. I can be compared to a kind of “chemical brain.” All metabolic activities are among my duties, including the control of excretions, digestion, and the composition of blood. You would be stupefied if I listed every single function I carry out, but let me tell you this much: biochemists have discovered that I am directly included in more than 80 different activities and related to more than 5,000 chemical reactions taking place in your body. Surprised? But this is only what they’ve learned so far; you do not know me in detail yet. My plain appearance is in contrast with my numerous functions. My size is about one-tenth of the body of a six-month-old fetus; now that you have become a young man, I weigh about one fiftieth of your body weight. Since I am the largest excretory organ in your body, I am firmly strapped with mesentery so you can run, jump, and make other movements without trouble.

Most people see me merely as a bile-producing organ, which happens to be among the simplest of my duties. Let me explain it another way: the heat I produce while working is equal to one-third of the heat your body produces while resting. I have a special circulatory system. Since I am located at a “junction,” the blood coming from the intestines which bear nutrient molecules come to my vein first together with the blood from the spleen, before joining the rest of the bloodstream. It can be compared to an obligatory customs check. The amount of blood I supervise within 24 hours is about 2,000 liters. With every heartbeat, almost 28 percent of the blood being pumped passes through me.

I adjust the level of blood sugar in a very sensitive balance. If you eat desserts or pastries I convert excess sugar into glycogen (animal starch) and store it. If your blood sugar decreases from hunger, I break down glycogen into sugar (glucose) and come to your help so that you do not come to a halt, like a car out of fuel.

I use various protein molecules to synthesize numerous enzymes. I also play a role in blood coagulation, red blood cell production, and storing the iron you need. You know, nothing is wasted in the divine system of nature. So how can I waste anything? When the aged red blood cells die, I help the spleen to break them down and store the iron they contain. My job in fat metabolism is no less important. Thanks to the bile I produce, the fatty food you eat is broken down to smaller molecules to be absorbed in a way similar to detergents remove oily remnants from dishes. Naturally, the fat-soluble vitamins (A, D, E, K) are also absorbed along the process. I store the excess of both these vitamins and fats. Fats are an important fuel particularly for your heart muscles. I excrete an average of 600–700 grams of bile a day. Two minutes after oily foods pass to duodenum the walls of my gallbladder are operated. Through contractions of 2–6 times a minute and a pressure of 25–30 mmHg, the bile is passed to duodenum in a time span of 15 to 90 minutes. What gives bile its yellowish-green color is the substance named bilirubin, which appears with the breaking down of the old red blood cells and disposed of through the bowels.

The Kuppffer cells—as you name them—have the duty of checking out newly produced blood cells one by one in addition to producing antibodies against germs. If any ill-formed blood cells come up, I must detect and destroy them. Otherwise they corrupt your blood. Thanks to the Kuppffer cells, the ill-formed blood cells are destroyed as soon as they are detected.

The average longevity of my cells varies between 150-180 days (220 days maximum). New cells are produced immediately to replace the dying ones and the system works smoothly. In each of these cells there are 1,000-3,000 mitochondria and millions of ribosome. An average of 180 new ribosome are produced every second. Although none of my cells have consciousness or intelligence, thousands of them come together to form little lobes resembling hexagons. The number of these lobes varies between 50,000 to 100,000.

Dear Peter, you intake various toxic substances together with the foods you eat. You don’t even realize that food has been corrupted by bacteria and fungi until its taste changes. Frankly, you should not have lived very long with so much toxic intake; Providence has given me an important duty to protect you from such harm. I capture these toxic compounds released into your bloodstream and neutralize them. The same goes for different medicines you take; I try to neutralize their toxic effects as well. But I have my own limits of tolerance; if I am faced with more toxic substances than I can handle, then I give signals of danger. You wonder how. Well, I shout “help” through red spots in your hands and itchy spots on your skin. You should be more careful about what goes down your throat.

Given that I fulfill various important functions, the littlest failure in me reveals itself as a health problem immediately. Hepatitis is among the common diseases heralding my failure. Excessive increase of bilirubin in your blood causes the white of your eye and your skin to turn yellow. I fear viruses most. Particularly hepatitis B and C viruses destroy my tissue. And alcohol, as you know, is my sworn enemy. I have to exert myself to neutralize even a tiny amount of alcohol. And if the hepatitis virus is added, I become knocked down and contract cirrhosis. It does not happen suddenly, though. Along the process which you know as liver failure I give various signals: skin eruption, digestion problems, sleepiness, and headache after meals, and so on. Since these symptoms are not serious problems, most people ignore these signals I give. Due to my various functions, the lab tests about me are more than a hundred.

Talking about my enemies may have upset you a bit, but it’s not all doom and gloom. After all, I am the organ with the highest capacity to renew itself. Sounds good, right? Otherwise I would have been finished off long ago, so this ability is a real blessing. Let me give you an example: although 90 percent of my cells are destroyed during hepatitis, I can help you survive with the remaining 10 percent if you rest well and control what you eat. If you ignore the disease, it might lead you and me to the grave. Do not ever believe those who take this lightly and say: “This doctor says that a small amount of alcohol is good for health.” Tell it to the marines. Those who say that should visit hospitals first. I’m sorry, Peter, but it really gets on my nerves. If they could only appreciate a work of art like me. Anyway, that’s all for now, please take good care of me.

Imagine: I have just been cooked, and I am now waiting on a dish. Oh, what’s that? A metal thing with four prongs has just stuck itself into my chest, and it threw me into a shaking room with a gate moving up and down. There are, in this room, 32 flat and occluding rocks, some of which are sharp, while some are like millstones, all being lined up in a U-shape row. The frontal rocks have divided me into large pieces by squeezing and cutting. My pieces are pushed backwards by a soft shovel underneath. The rear rocks have made me almost like a paste, thoroughly mashing my pieces. Meanwhile, many taps on the right and left sides and in bottom of the room began flushing water upon me, and the carbohydrates within me have began dissolving by the pityalin enzyme (alpha amilaz) in this water. The flushing water contains substances such as lyzozym and antichore to eliminate any probable microbes within me.

I was fully softened and turned into something almost like gruel, when suddenly I was impelled by the actions of that soft shovel to an extremely tight tube inside of which movements continuously push me downward. A gate opened while I was being brought down and, as I was hoping to enter into a more spacious room and be saved from the compressive movements, I suddenly flopped into a well containing a light-colored liquid. I have come to know, while I was expecting to have some refreshment, that the liquid I flopped into was an acid capable of eroding marble (pH=0,8). I cried ‘Oh My God!’, but it was too late. This acid began to break my proteins down. The pepsinogen which was simultaneously being secreted by some cells over the walls of this large room and which were ineffective within an acid-free environment, became instantly activated by this acid and began to thoroughly break me up. Most of my proteins were broken. While I was wondering and asking ‘how come the liquid I flopped into is capable of eroding the marble but not capable of breaking up this well?’, I have come to notice that walls of the well were coated with a thin layer of mucous substance (membrane) which is unbreakable by acids.

I said ‘Oh My God! As long as you do not permit, these acids, which can erod marble, are not capable of damaging a soft tissue!’. Together with other foodstuff, I have been both blended and broken in this well-like room for about an hour. Later, the outer walls have again squeezed us, and we have been ejected yet again, this time into a new tube at an opposite direction to the one we were just pushed out of, by a sudden loosening and opening of a valve. This tube (called duodenum in Latin) has a length of about 15-18 cm and, appears as if lined up side by side. Here too, we felt wretched and were faced by a basic secretion (sodium bicarbonate) being ejaculated from a tap. This liquid was inactivating (neutralizing) the acids mixed with us, i.e., preventing them from damaging the unprotected walls of the tube which we were in.

Here again the amylaz, lipaz, trypsin, kymotrypsin and carbocsypolypeptidas attacked me, all of which break up, in a respective order, carbohydrates, fats and proteins of my ingredients, along with a lot many other enzymes, and they broke me up to my smallest constituents. Meanwhile, I started pondering the reasons why these enzymes, which are making mincemeat of me, are not damaging the tap (pancreas), which are composed of the same proteins, fats and carbohydrates that they come from. Then, I have come to realize that these enzymes could not become activated in pancreas tissue, since it does not have any activating factors, but they gained shredder features only after we arrived in the tube we are in, and only with the help of such factors which are being secreted from the intestinal walls.

After having been fully shredded within this narrow tube, a green liquid (bile), was poured on us as we were approaching its end. This detergent-like liquid was particularly responsible for shredding the fats in my ingredients. I understood, after all of this, that I was passing through a very excellent factory. As I and my fellow meatballs proceeded inside this narrow tube of approximately three meters long, no part of us remained un-shredded, except the cellulose fibers of plants such as parsley and onion which accompanied us. They continued their journey until arriving at a very thick and short tube. I have found out that their sap have been absorbed and their leftovers, after being amassed for some time, have been thrown into a cesspool called a toilet.

In the meantime, we have noticed that the walls of this tube are plicate and protuberant. These walls are apparently the places where our particles penetrate into another realm through two different ways. We understood that, via rather thin capillary channels situated inside these protuberances, we were being transferred into narrower tubes which contained two different (red and white) types of liquids (blood and lymph vessels). Now, there isn’t ‘me’ anymore, instead, there is only an ‘us’ which is composed of very smaller particles. While glucoses, the simplest forms of carbohydrates and aminoacids, the simplest forms of proteins are being transferred into the red liquid, our fat acid siblings are transferred into the white liquid of lymph vessels. Our glucose and aminoacid siblings have been carried by the red liquid to a factory called a liver. They are being returned to the red liquid after having passed through certain processes and being equipped with some useful characteristics here. But, the fats (lymphs) of the white liquid are, for some reason or another, being separately transferred into the red liquid, bypassing this factory. I learned the reason later: if the fat acids came to the liver together with glucoses and aminoacids, they would spoil this factory and kill its workers.

Finally, the red liquid carried us to tiny cell chambers numbering almost 100 trillion. Each of our tiny particles were sent to separate cells. Here, water, carbondioxide and energy were being produced by primarily coupling of our sibling glucose with oxygen. I learned that energy was needed for the functioning of these cells. Our fat siblings were also being utilized (consumed) for producing energy if glucoses were found insufficient for that purpose. Our amino acid siblings were being utilized (consumed) in the production of sound (strong) proteins and glucoses, and of energy in cases of the unavailability of fat sources for use in the cells’ structures. Excessive amounts of fat and glucose were being stored in these tiny cells. That is to say, I, who was a meatball at the beginning, was converted into water, carbondioxide and energy at the end of this painstaking journey. I was promoted (exalted) to the degree of humanness and rewarded a great deal of honor, as some parts of me became constituent of and some other parts of me assumed responsibility in vital cell functions of the human body.

After all these disintegrations and absorptions, some parts of us took their share in the structure of the body, while some others which were used in energy production including me were converted into a choky and dirty gaseous state called carbondioxide. We have been thrown back into the red liquid again since we would perhaps choke the cells we are within should our density increase very much. We have been brought to a marvellous and sponge-like factory named a lung, and composed of millions of vesicles, by being placed onto a molecule called hemoglobin, which is being pushed by a big pump. We have replaced the oxygen of the fresh air arriving to the lung vesicles. Now is the time for bidding farewell the human body. I thanked God, for I regained my freedom as a carbondioxide passing through and escaping from very dark and narrow places.

However, I was placed upon the leaf of a green plant after aimlessly roaming in the air for some time. After being filtered through the little windows (stoma) over the leaf, I was brought inside by the chlorophyll factory marvelously functioning inside these cells. Here, they forced me to unite with the water brought by tubules from the soil. Upon telling them that I cannot afford to do that, they instantly changed my true nature with solar rays and turned met into a chemical energy depot. I was no more a simple carbon atom; thus, I found a place for myself within an energy-emiting glucose molecule. I was in a position suitably convertible to starch, protein or fats in accordance with the true nature and genetic program of the plant I was within. Something incredible happened while I was swinging around on a green clover leaf. The leaf I was in has been eaten by a cow with real pleasure.

A new chapter has now opened inside the cow’s body. I was assigned with certain duties within the muscle proteins of my new host after having passed through a number of chemical processes. And I really enjoyed them. I was feeling myself more as an animal protein than a simple grass. By leaving the grass for a cow’s body, I was promoted (exalted) one more degree on the way to becoming manifestations of the divine attributes of God.

This blessed animal in whom I was assigned has been sacrificed during a Muslim feast of sacrifice, its meat ground into a meat grinder, and I have been served to you once again as a meatball.

Ali Uguz is a teacher of biology. He lives in Turkey.